Methylorubrum extorquens PA1: Mext_2380
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Entry
Mext_2380 CDS
T00640
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
mex
Methylorubrum extorquens PA1
Pathway
mex03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mex00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Mext_2380
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mex03019
]
Mext_2380
03016 Transfer RNA biogenesis [BR:
mex03016
]
Mext_2380
Enzymes [BR:
mex01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
Mext_2380
Messenger RNA biogenesis [BR:
mex03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
Mext_2380
Transfer RNA biogenesis [BR:
mex03016
]
Prokaryotic type
tRNA degradation factors
Mext_2380
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
S1
OB_RNB
RNase_II_C_S1
Motif
Other DBs
NCBI-ProteinID:
ABY30775
LinkDB
All DBs
Position
2631314..2633680
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AA seq
788 aa
AA seq
DB search
MARRINPTAGTPVLPSREQILAFVAETPGKVGKREIAKAFGISGADKIGLKAILKEIEAE
GALERDRGGLRKSGSLPPVVLADIVSRDRDGDLIARPAQWDGEGEAPKIAVETPRAGRKG
NRPAPGIGDRALVRVAPDPEVPGRYTGRVIKVIGKNRSEVIGVYRAGRDGGRLLPVEKKS
QGKEIAIPPGEEGEARDGDLVSVAVERETRFGLPRGRVTERLGALGSEKAVSLIALHIHN
IPHVFPAAVLAEADAAKRATKRGREDWREAPLVTIDPPDAKDHDDAVMAEADPDPANAGG
FIVTVAIADVAAYIRPDSALDREALLRGNSVYFPDRVVPMLPERISNDLCSLREGEDRPA
LAVRMIIGADGVKRSHSFHRILMRSHAKLAYAQAQAAIDGRPDEKSGPVLETALRPLYAA
YEAMKRARDARGPLALDLPERKVLLDAEGGVDRVIVPERLEAHRLIEEFMIQANVAAAET
LEKAGSPLIYRVHDEPALEKMRALGEVLASVGVKMTKAGALRPDLFNRILAQVAESEHAP
FINEVVLRSQAQAIYAAQNLGHFGLNLRRYAHFTSPIRRYADLIVHRALVRACGLGKDGL
PDDTTPGMLDAVSEQISAAERRAMAAERETIDRLIAGYLADRVGATFTGRISGVTRSGLF
VKLAETGADGFVPVSTIGHEYYRHDEALHALVGDRSGETYRLGDTVEVRLVEAAAVAGAL
RFEILSEGRSRSGAKGGGIKRSGSKANPGKAKLGKAKFGAKPPKGKTRPGKAAASESDTA
RRHRGSRR
NT seq
2367 nt
NT seq
+upstream
nt +downstream
nt
ttggccagacgcatcaatccgacggcgggcacccccgttctcccctcccgcgagcagatc
ctcgccttcgtcgccgagacgcccggaaaggtcggcaagcgcgaaatcgccaaggccttc
ggcatctcgggcgccgacaagatcggcctcaaggcgatcctgaaggagatcgaggccgag
ggcgcgctcgagcgtgaccgcggcggcttgcggaaaagcggcagcctaccgccggtcgtg
ctcgccgacatcgtgtcgcgcgaccgcgacggtgacctgatcgcccgcccggcgcagtgg
gacggggagggcgaggcgcccaagatcgccgtcgagaccccgcgtgccggccgcaagggc
aaccgccccgcccccggcatcggtgatcgggcgctggtccgcgtcgcgccggacccggaa
gtgcccggccgctacaccggccgcgtcatcaaggtgatcggcaagaaccgctccgaggtg
atcggcgtctatcgcgcgggccgcgacggcgggcgcctgcttcccgtcgagaagaaatcg
cagggtaaggagatcgcgatcccgccgggcgaggaaggtgaggcccgggatggcgacctc
gtcagcgtcgcggtggagcgcgagacccgcttcggcctgccccgtgggcgcgtcaccgag
cggctcggcgcgctcggctccgagaaggcggtgagcctgatcgcgctgcacatccacaac
atcccgcatgtcttccccgccgccgtgctggcagaggcggatgcagccaagcgcgcgacc
aagcgcggtcgcgaggattggcgcgaggcgccgctggtcaccatcgacccgcccgacgcc
aaggaccacgacgacgcggtgatggctgaggccgatcccgatccggccaatgcgggcggc
ttcatcgtcaccgtcgcgatcgcggatgtggccgcctatatccggccggattcggccctc
gaccgcgaggcgctgctgcggggcaattcggtctacttccccgaccgggtggtgccgatg
ctgcccgagcgcatctcgaacgatctctgctcgctgcgcgagggcgaggaccgcccggcg
ctcgccgtgcggatgatcatcggcgcggacggggtgaagcgcagccacagcttccaccgc
atcctgatgcgctcgcacgccaagctcgcctatgcgcaggcgcaggccgcgatcgacggc
cggccggatgagaagtcgggaccggtgctggagacggcgctgcgcccgctctacgcggcc
tacgaggcgatgaagcgggcccgcgacgcccgcggcccgctcgccctcgacctgccggag
cgcaaggtgctgctcgacgcggaaggcggcgtcgatcgggtgatcgtgccggagcgtctt
gaggcgcatcggctgatcgaggagttcatgatccaggccaacgtcgcggcggccgagacg
ctggagaaggcgggctcgccgctgatctaccgggtccacgacgaaccggccctggagaag
atgcgcgcgctcggcgaggtgctcgcctcggtcggcgtcaagatgaccaaggccggtgcg
ctgaggccggacctgttcaaccgcatcctcgcccaggtggccgagagcgagcacgcccca
ttcatcaacgaggtggtgctgcgttcgcaggcacaggcgatctacgctgcacagaattta
ggccatttcggcctcaacctgcgccgctacgcccacttcacctcacccatccgtcgctac
gcggatctcatcgtccaccgtgctctcgtgcgtgcctgcggattgggcaaggacggcctg
ccggacgacaccacaccgggtatgctcgacgcggtctccgagcagatttcggcggccgag
cgccgggcgatggcggccgagcgcgagaccatcgaccggctcatcgccggctatctcgcc
gaccgcgtcggcgcgactttcaccggccggatttccggggtgacgcgctcggggctgttc
gtgaagctcgccgagaccggggccgacgggttcgtgcccgtctccaccatcggccacgaa
tattatcgccacgacgaggccctgcatgccctcgtcggcgaccgcagcggcgagacctac
cgcctcggcgacacggtcgaggtccgcctcgtcgaggcggcggcggtggccggcgccttg
cgtttcgagatcctgtcggaggggcgcagccgctccggcgccaaaggcggtgggatcaag
cgcagcgggtccaaggcgaatccgggcaaggcgaagttgggcaaggccaagttcggtgcg
aagccaccgaagggcaagacgcgccccggcaaggcggcggcctccgagagcgatacggcg
cggcgccatcgcggctcgcgtcgctga
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