Methylorubrum extorquens PA1: Mext_2571
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Entry
Mext_2571 CDS
T00640
Name
(GenBank) DEAD/DEAH box helicase domain protein
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
mex
Methylorubrum extorquens PA1
Pathway
mex03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mex00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Mext_2571
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mex03019
]
Mext_2571
Enzymes [BR:
mex01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
Mext_2571
Messenger RNA biogenesis [BR:
mex03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Mext_2571
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
Utp25_C
Motif
Other DBs
NCBI-ProteinID:
ABY30965
LinkDB
All DBs
Position
2888454..2889986
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AA seq
510 aa
AA seq
DB search
MTQFTDFGLAQPVLRALEEAGYVTPTPIQAQAVPPAMEGRDLCGIAQTGTGKTAAFALPI
LHRLSLDSRRAPRRGCRVLVLSPTRELASQIADSFSDYGRHLPYTNTVVFGGVNITRQER
AIAPGVDILVATPGRLIDLVDRRALTLEGVEILVLDEADQMLDLGFIHALKRIVKMLPAK
RQSLFFSATMPKNIAGLADQYLSNPVQVAVTPVATTAERVDQQVIFCHTGAKQALLNHVL
RDPKIERVLVFTRTKHGADRVVRGLDKASVVSAAIHGNKSQPQRERALAAFRDGSCRVLV
ATDIAARGIDVDGVTHVVNYDLPNVPESYVHRIGRTARAGAEGQAISFCNDEERAYLRDI
ERTTRQKIPVGGFPEGFVPPTRQEAQDNAAEEARRPPRQPQGRPGQRQGRPGGGRGQGGE
GRGEPRAHEARGGRPGGQPGHRQDQRAAGAPRPDGQRQDQRRPERAGEARPQGARPQGAR
PSDGRRDGRPARSGGEGGRAIGWLDRAPRT
NT seq
1533 nt
NT seq
+upstream
nt +downstream
nt
ttgacccaatttaccgatttcggcctcgctcagcccgtgctccgcgcgctggaagaggcc
ggctacgtcacgccgacgccgatccaggcgcaggccgtcccgcccgcgatggaaggccgc
gacctctgcggcatcgctcagaccggcaccggcaagaccgccgccttcgccctgccgatc
ctgcatcgcctgtcgctcgacagccgccgtgcgccgcgccgcggttgccgcgtgctcgtg
ctgtcgccgacccgcgagctcgcaagccagatcgccgacagcttctcggactatggccgg
catctgccctacaccaacaccgtcgtcttcggcggtgtgaacatcactcgccaggagcgg
gcgatcgcgccgggcgtcgacatcctcgtcgccacgccgggccggctcatcgacctcgtc
gatcgccgtgcgctgacgctggagggcgtcgagatcctcgtcctcgacgaggccgaccag
atgctcgacctcggcttcatccacgcgttgaagcgcatcgtgaagatgctgccggccaag
cgccagagcctgttcttctcggccaccatgccgaagaacatcgccgggctcgccgaccag
tatctcagcaacccggtgcaggtggcggtcacgcccgtggcgaccaccgccgagcgcgtc
gatcagcaggtcatcttctgccataccggcgccaagcaggccctgctcaaccacgttctg
cgtgatccgaagatcgagcgcgtgctcgtcttcacccgcaccaagcacggtgcggaccgg
gtcgtgcgcggcctcgacaaggccagcgtcgtcagcgcggcgatccatggcaacaagagc
cagccgcagcgcgagcgggcgctcgccgccttccgcgacggttcctgccgcgtgctggtg
gcgacggacatcgccgcccgcggcatcgatgtcgacggcgtgacccacgtcgtgaactac
gatctgccgaacgtcccggaatcctacgtccaccgcatcggccgtacggcccgcgcgggt
gcggaaggtcaggcgatttcgttctgcaacgacgaggagcgcgcttacctgcgcgacatc
gagcgcaccacgcgccagaaaattcccgtcggcgggttccccgagggctttgtgccgccg
acgcgccaggaagcgcaggacaacgccgctgaggaggcgcgccgtccgccgcgtcagccc
cagggtcgccccggccagcgccagggtcgtccgggtggcggtcgcggccagggtggcgag
ggacgcggcgagccgcgcgcccatgaggcccgcggcgggcgccccggtggacagccgggt
caccgtcaggaccagcgcgccgccggcgcaccgcgccccgacggtcagcggcaggaccag
cgccgtcccgagcgggccggcgaggcccgtccgcagggtgcgcgtccgcaaggagcccgt
ccgagcgacggccgtcgcgacggtcggcccgcgcgctccggtggggagggcggccgggcg
atcggctggctcgaccgcgcaccgcgcacctga
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