Methylorubrum extorquens PA1: Mext_3308
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Entry
Mext_3308 CDS
T00640
Name
(GenBank) DNA topoisomerase I
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
mex
Methylorubrum extorquens PA1
Brite
KEGG Orthology (KO) [BR:
mex00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
mex03032
]
Mext_3308
03400 DNA repair and recombination proteins [BR:
mex03400
]
Mext_3308
Enzymes [BR:
mex01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
Mext_3308
DNA replication proteins [BR:
mex03032
]
Prokaryotic type
DNA Topoisomerases
Mext_3308
DNA repair and recombination proteins [BR:
mex03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
Mext_3308
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Topoisom_bac
Toprim_C_rpt
Toprim
Zn_ribbon_Top1
Toprim_4
Motif
Other DBs
NCBI-ProteinID:
ABY31695
LinkDB
All DBs
Position
complement(3668132..3670864)
Genome browser
AA seq
910 aa
AA seq
DB search
MKVVVVESPAKAKTINKYLGRDYEVLASFGHIRDLPAKDGSVDPEADFAMIWEVEDRGAK
RVSEIARAVKGAEKLILATDPDREGEAISWHVIEALTARKALKGIPVERVTFNAITKASV
DAAMKKPRQIDQALVDAYLARRALDYLVGFNLSPVLWRKLPGARSAGRVQSVALRLVVER
EMEIERFKPREYWSIIATLVTEAGGVFEARLVGADGKRIQRLDVGNAEEAAAFKRDLELA
TFQVASIEAKPAKRHPQPPFTTSTLQQEASRKLGMAPAQTMRVAQRLYEGVDVGGETVGI
ITYMRTDGVDMAPEAIQDARQVIGREFGDAYVPGAPRKYTVKAKNAQEAHEAVRPTDMGR
LPKHVARHLEPEQAKLYDLIWTRTIASQMESAELERTTVEVSANVGPRRIDLRATGQVVK
FDGFLALYQEGKDDEEDEDAKRLPAMKAGDALKRERIASTQHFTEPPPRYSEASLVKRME
ELGIGRPSTYAAVLQTLRDREYVRIEKKRLQPEDKGRLVTGFLESFFKRYVEYDFTASLE
EQLDRVSNAEIDWRSVLRDFWRDFSAAIGGTKELRVAEVLEALNGLLGPHIFPEKADGGD
PRACPTCGAGQLSLKLGKFGAFIGCSNYPECKYTRQLSASGVEGEGDGSSAEGGQPGVRV
LGEDPATGLPVTLRDGRFGPFVQLGEASAEKGAEKPKRSSLPKGMTPGSVTLEIALRLLS
LPREVAKHPETGEPILANLGRFGPYVQHGKTYANLGKDDDVLEIGANRAIDLIVAKEQGG
GRGRPSSDPGRTLGQHPDGAALVVKAGKYGPYVSDGSVNATLPKTMAAESLTLEQAIDLV
NAKRASGGGKKPVRKTASRARAPAKKAEAGEAKKPAVRKTAAKTAAKAPATKAAAKPAAA
KKATAKTKAG
NT seq
2733 nt
NT seq
+upstream
nt +downstream
nt
atgaaagtcgtcgtcgtcgagtcgccggccaaggccaagacgatcaacaaatacctgggg
cgcgattacgaggttctggcctcgttcggccatatccgcgatctgccggccaaggacggc
tcggtcgatccggaggccgacttcgccatgatctgggaggtggaagatcgcggcgccaag
cgtgtgtccgagatcgcccgcgccgtgaagggagccgagaagcttatcctcgcgaccgac
ccggatcgcgagggcgaggcgatctcctggcacgtcatcgaggcgctcaccgcccgcaag
gcgctcaagggcatccccgtcgagcgcgtgaccttcaacgccatcaccaaggcgtcggtc
gacgcggcgatgaagaagccgcgccagatcgaccaggccttggtcgatgcctatctcgcg
cgccgcgctctcgattacctcgtcggcttcaacctctcgccggtgctgtggcgcaagctg
cccggcgcccgctcggctggccgcgtgcagtcggtggcgctccgtctcgtggtcgagcgc
gagatggagatcgagcgcttcaagccgcgtgagtactggtcgatcatcgcgacgctggtg
acggaagccggcggcgtgttcgaggcccggctcgtcggcgccgacggcaagcgcatccag
cgcctcgatgtcggcaacgccgaggaggccgccgccttcaagcgcgacctcgaactcgcg
accttccaggtggcgagcatcgaggccaagcccgccaagcgccatccgcagccgcccttc
accacctccaccctgcagcaggaggcgtcccgcaagctcgggatggccccggcgcagacc
atgcgggtcgcgcagcggctctacgagggcgtggatgtcggcggtgagaccgtcggcatc
atcacctatatgcgaaccgacggcgtcgacatggcgccggaggcgatccaggacgcgcgc
caggtgatcggccgcgagttcggcgacgcttacgtccccggcgcgccgcgcaaatacacc
gtcaaggccaagaacgcgcaggaggcccacgaggccgtgcgcccgaccgatatgggccgg
ttgccaaagcacgtcgcccgccacctcgagccggagcaggccaagctctacgacctgatc
tggacccgcaccatcgcgagccagatggaatcggccgagctggagcgcaccaccgtcgag
gtcagcgcgaatgtcggcccgcgccggatcgacctgcgcgccaccggtcaggtcgtgaag
ttcgacggcttcctcgcgctctatcaagagggcaaggacgacgaggaggacgaggacgcc
aagcgcctgccggcgatgaaggcgggcgacgcgctcaagcgcgagcgcatcgcctcgacc
cagcacttcaccgagccgccgccgcgctactccgaggccagcctggtcaagcggatggag
gagctcggcatcggccggccctcgacctatgccgcggtgctgcagaccctgcgcgatcgc
gaatatgtccgcatcgagaagaagcgcctccagccggaggacaaggggcggctcgtcacc
ggcttcctcgaaagcttcttcaagcgctacgtcgagtacgacttcaccgcgagcctggag
gagcagcttgaccgggtctcgaatgccgagatcgactggcgctccgtgctgcgcgacttc
tggcgcgatttttccgccgcgatcggcggcaccaaggaattgcgcgtcgcggaggttctc
gaggcgctcaacggcctgctcgggccccacatcttccccgagaaggcggatggcggcgat
ccgcgcgcctgcccgacctgcggggcaggccagctctcgctcaagctcggcaagttcggc
gccttcatcggctgctcgaattacccggaatgcaagtatacccgccagctttcggcctcg
ggtgtcgagggcgagggtgacggctcctcggccgagggcggccagcccggcgtgcgcgtg
ctcggcgaagatccggccaccggcctgcccgtgaccctgcgcgacggccgcttcgggccg
ttcgtgcagctcggcgaggcgagtgccgagaaaggcgcggagaagcccaagcgctcctcg
ttgcccaagggcatgacgccgggcagcgtaacgttggagatcgcgctgcgcctgctgtcg
ctgccgcgcgaggtggccaagcatccggagaccggcgagccgatcctagccaatctcggc
cgcttcggtccctacgtgcagcacgggaagacctacgccaatctcggcaaggacgacgac
gtgctggagatcggcgccaaccgcgccatcgacctcatcgtcgccaaggagcagggcggc
gggcgcggtcgcccctcctccgatcccggccgcacgctcggccagcatccggacggcgcc
gccctcgtggtcaaggccggcaagtacggcccctatgtcagcgacggctcggtcaacgcc
acgctgccgaagaccatggccgccgagagcctgacgctggagcaggcgatcgacctcgtc
aacgccaagcgtgcctcgggcggcggcaagaagccggtccgcaagacggcttcccgcgcc
cgcgctccggcgaagaaggcggaggccggcgaggcgaagaagccggccgtgcgcaagacc
gcagcaaagacggcggccaaggcgccggcgacgaaggccgccgccaaaccggcagctgcc
aagaaggcgacggcgaagacgaaggcgggctga
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