Methylorubrum extorquens PA1: Mext_3425
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Entry
Mext_3425 CDS
T00640
Name
(GenBank) Orn/DAP/Arg decarboxylase 2
KO
K01586
diaminopimelate decarboxylase [EC:
4.1.1.20
]
Organism
mex
Methylorubrum extorquens PA1
Pathway
mex00300
Lysine biosynthesis
mex00470
D-Amino acid metabolism
mex01100
Metabolic pathways
mex01110
Biosynthesis of secondary metabolites
mex01120
Microbial metabolism in diverse environments
mex01230
Biosynthesis of amino acids
Module
mex_M00016
Lysine biosynthesis, succinyl-DAP pathway, aspartate => lysine
Brite
KEGG Orthology (KO) [BR:
mex00001
]
09100 Metabolism
09105 Amino acid metabolism
00300 Lysine biosynthesis
Mext_3425
09106 Metabolism of other amino acids
00470 D-Amino acid metabolism
Mext_3425
Enzymes [BR:
mex01000
]
4. Lyases
4.1 Carbon-carbon lyases
4.1.1 Carboxy-lyases
4.1.1.20 diaminopimelate decarboxylase
Mext_3425
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Orn_Arg_deC_N
Orn_DAP_Arg_deC
Ala_racemase_N
Motif
Other DBs
NCBI-ProteinID:
ABY31811
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All DBs
Position
complement(3801726..3803021)
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AA seq
431 aa
AA seq
DB search
MTQAVSPDLAAALIAENFSRDASGVLRVGGLPLTELAKDFGTPLFVYDADTMRRTYRALC
AALAGFAEVDFSVKANPNPAVIRVFSQEGAGAEIASGAEFDAAIRAGVPPEKILFAGPGK
GAADLDRVIGGGIGEIHLENREEIVRVAAAAERHGVHVRVALRVNPGATAQGGAMRMGGK
PSPFGFDEEDIEAAIDTVEAEPRLRLIGLHLFAGTQGLKADTLLGQWAYGLGLAARIANR
IGRPLETIDLGGGLGIPYFSGDTALDLGAIRAGLPDLIATLRADPRLASARVVLEPGRYL
TGPAGVYVARVLAVKESRGSRFVITDGGMHHHLAASGNLGQIVKRDFPLAAVTDAGGERA
ATAVVGPLCTPLDMLARAAPLPPLPEGDLVAVLQSGAYGLTASPTGFLSHPTPAEVLVDG
GEAREIRARGP
NT seq
1296 nt
NT seq
+upstream
nt +downstream
nt
atgacccaggccgtctctcccgacctcgccgccgcgctgatcgccgaaaacttttcccgc
gatgcgagcggtgtgctgcgggtcggcggcctgccgctgaccgagctcgcaaaggatttc
ggcacgccgctcttcgtctacgacgccgatacgatgcgccggacctaccgggcgctgtgc
gcggcactcgccggcttcgcggaggtggatttttcggtcaaggcgaaccccaacccggcg
gtgatccgcgtcttctctcaggagggcgcgggggccgagatcgcctccggcgccgagttc
gacgccgcgatcagggcgggtgttccaccggaaaagatcctgttcgccggcccaggcaag
ggtgcggccgacctcgaccgggtgatcggcggcggcatcggcgaaatccatctcgaaaac
cgcgaggagattgttcgcgtcgcggcggcggctgagcgtcacggcgtgcacgtgcgggtg
gcgctgcgggtcaatcccggtgcgaccgctcagggcggggcgatgcggatgggcggcaag
ccttcgccgttcggcttcgacgaggaggacatcgaggccgccatcgacaccgtggaggcc
gaaccgcgcttgcgcctcatcgggctccacctgttcgcgggcacgcaagggctgaaggcc
gacaccctcctcggccagtgggcctacgggctcgggcttgcggcgcggatcgcgaaccga
atcgggcggccgctggagacgatcgatctcggcggcggcctcggcatcccgtacttttcc
ggcgacaccgccctcgatctcggcgcgatccgggccgggctgcccgacctgatcgccacc
ctgcgggcggacccgcggctggcgagcgcccgcgtggtgctggaacccggccgctacctc
accgggccggcgggcgtctacgtggcgcgggtgctggcggtgaaggaatcgcgcggcagc
cgcttcgtcatcaccgatggcggcatgcaccatcacctggccgcgagcggcaatctcggc
cagatcgtcaagcgcgacttccccctcgccgcggtgaccgatgcgggtggcgaacgcgcg
gcgacggcggtcgtcggcccgctttgcacgccgctggacatgctggcccgcgccgctccc
ctgccgccgctgcccgagggcgatctcgtcgcggtgctgcaatcgggcgcctacgggctc
accgcgagcccgacgggcttcctgagccacccgaccccggccgaggtgctggtggacggg
ggcgaggccagggagatccgggcgcgcgggccttga
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