Methylorubrum extorquens PA1: Mext_3659
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Entry
Mext_3659 CDS
T00640
Name
(GenBank) ribonuclease, Rne/Rng family
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
mex
Methylorubrum extorquens PA1
Pathway
mex03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mex00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Mext_3659
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mex03019
]
Mext_3659
03009 Ribosome biogenesis [BR:
mex03009
]
Mext_3659
Enzymes [BR:
mex01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
Mext_3659
Messenger RNA biogenesis [BR:
mex03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
Mext_3659
Ribosome biogenesis [BR:
mex03009
]
Prokaryotic type
rRNA processing factors
Mext_3659
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Motif
Other DBs
NCBI-ProteinID:
ABY32037
LinkDB
All DBs
Position
complement(4042615..4045764)
Genome browser
AA seq
1049 aa
AA seq
DB search
MANNKMLIDAMHPEETRVVTVQGSRVEEFDFEAANRRPLRGNIYLAKVTRVEPSLQAAFV
EYGGNRHGFLAFNEIHPDYYQIPMADRLALIEAEAREEEEHREREERRPPRGRRSRGRRA
EARGSRPDDTVKSQEAVSDAGSEDAAIPGEGQAADAPAPEAIEAVRSALVEGRIEERNDE
RSESDAASAPVEAGGDASASLPEAALEPPTSASEAPADEAAAVEPSDIAAISEAPNPPVE
TTESSEAAPAEVDSAEAETVEPQPVAASAPVSQAEIEEADADSDEDSETDDSDDEDSEDD
ESDDEDEDDDSEDDDSDDEDDDEESEDGEPRVAQVGGSGDALAELPERPRAYRRHYKIQE
VIKRRQIILVQVVKEERGTKGAALTTYLSLAGRYSVLMPNTGRGGGISRKITSAADRKRL
KEVVADLDVPDGMGIILRTAGASRTKPEIKRDFEYLMRLWESVRELTLSSTAPALVYEEG
SLIKRAIRDLYNKDLDEVLVSGEDAYREAKDFMRMLMPGQSKVVKPYRDPTPIFARYGVE
QQLDAMFSTHVALRSGGYLVINPTEALVSIDVNSGRATREHDIEDTALKTNLEAAEEVAR
QVRLRDLAGLVVIDFIDMEEKRNNRAVEKRLNEALKNDRARIQVGRISPFGLLEMSRQRI
RTGVLESSSIPCAHCGGSGFVRATSSVALHILRSIEEVLLKSASHNVVLRTRTETALYIL
NQKRAHLFDLEQRFSVTITISADDRLVATSAFQLERGEPAVKHEGPVTGVRAVAISPVYE
AEEFEDEAVESQETEEVETEVEAEAEGASEERPAADASEEGGGRRRRRRRRRGGRTAGEG
EARARDEDGTDSEDGAEDGAEDGDDAPDSEPEAAEAALGAAADPDETASDADANGEDANG
RRRRRGRRGGRGRGRTERNGRSDSEQDADADEAGAVRAAEESEAHPEETASDTLPVGPEE
PFNDADVSTVSLAAENGAAAEPPPVVPAPELEPIQVESFAEAATEAAAPSPANAEPAPEP
VAVVLTPPDPNRPKRAGWWSRTKAALSGE
NT seq
3150 nt
NT seq
+upstream
nt +downstream
nt
atggccaacaacaagatgctcatcgatgcgatgcatccggaggagacccgggtcgtcaca
gtccaaggctcgcgggtcgaggaatttgatttcgaggcggccaaccgccggcctctgagg
ggcaacatctatctcgccaaggtcacccgcgtggagccctcgctccaggcggccttcgtc
gagtacggcggcaaccgccacggcttcctcgccttcaacgagatccaccccgattactac
cagatcccgatggccgaccgcctcgcgctgatcgaggccgaggcgcgcgaggaagaggag
caccgcgagcgcgaggagcgccgtccgccgcggggccgccgctcgcgcgggcgccgggcc
gaggcccgcggctcgcgccccgacgacacggtgaagtcgcaagaggcggtgtccgacgca
ggctccgaggacgctgcgatccccggtgagggccaggccgccgacgcgcccgcgccggag
gcgatcgaggcggtgcggtccgctctcgtcgaaggacggatcgaagaacggaacgacgag
cggagcgagagcgacgcggcgtccgcaccggtcgaggccggcggcgatgcctccgcgagc
ctgcccgaggcggcgctggagccccccacctccgccagcgaggcgccggctgacgaagcc
gccgcggtcgagccctccgacatcgccgcgatctccgaggcgccgaacccgcccgtcgaa
accacggaatcctccgaggctgctcccgccgaggtcgattccgctgaggcagagacggtc
gagccgcagcccgtcgccgccagcgcgcccgtctcccaggccgagatcgaggaagccgac
gcggattcggacgaggactccgagaccgacgactcggacgacgaggactcggaggatgac
gagtccgacgacgaggatgaggacgacgattccgaggacgacgattcggacgacgaggac
gacgacgaggaatccgaggacggcgagccgcgcgtcgcgcaggtcggcggctcgggcgat
gcgctcgccgagctccccgagcgtccgcgcgcctatcgccgccactacaagatccaggag
gtgatcaagcgccgccagatcatcctcgtccaggtcgtcaaggaagagcgcggcaccaag
ggcgcggcgctcaccacctacctgtcgctggccggccgctactcggtgctgatgcccaac
accggacgaggcggcggcatctcgcgcaagatcacctcggccgccgaccgcaagcgcctc
aaggaagtggtcgccgacctcgacgtgccggatgggatggggatcatcctgcgcacggcc
ggcgcctcgcgcaccaagcccgagatcaagcgcgacttcgagtacctgatgcgcctgtgg
gagagcgtgcgcgagctgacgctgtcctcgaccgccccggcgctcgtctacgaggagggc
tcgctgatcaagcgggcgatccgcgacctctacaacaaggatctcgacgaggttctggtc
tccggcgaggacgcctaccgcgaggccaaggacttcatgcggatgctgatgcccggccag
tccaaggtcgtgaagccctaccgcgatccgacgccgatcttcgcccgctacggcgtcgag
cagcagctcgacgcgatgttctcgacccacgtggcgctgcgctccggcggctacctcgtc
atcaacccgaccgaagcgctggtctcgatcgacgtgaactcgggccgcgcgacccgcgag
cacgacatcgaggacaccgcgctcaagacgaacctcgaggcagccgaagaggtcgcccgg
caggtgcgcctgcgcgatctggccggcctcgtcgtgatcgacttcatcgacatggaggag
aagcgcaacaaccgggcggtggagaagcgcctgaacgaggcgctcaagaacgaccgggcg
cgcatccaggtcgggcggatctcgcccttcggcctgcttgagatgagccgccagcgcatc
cgcaccggcgtgctcgaatcctcctcgatcccctgcgcccattgcggcggctcgggcttc
gtgcgggcgacctcctcggtggcgctgcacatcctgcgctcgatcgaggaagtgctgctc
aagtcggcgagccacaacgtcgtgctgcgcacccgcaccgagacggcgctctacatcctc
aaccagaagcgggcgcatctcttcgatctcgagcagcgcttctcggtcacgatcaccatt
tccgccgacgaccggctcgtggcgacctccgccttccagctcgaacgcggtgagccggcg
gtgaagcacgagggcccggtgacgggcgtgcgcgccgtggcgatctcgccggtctacgag
gccgaggagttcgaggacgaggcggtcgagagccaggagaccgaagaggtcgagaccgag
gtcgaagcggaggccgagggcgcgtccgaggagcgcccggccgccgacgcgtccgaggag
ggcggtggccgtcgccgccgtcgccgtcgccgtcgcggtggtcgcaccgccggtgagggc
gaggcccgcgcgcgggacgaggacgggaccgacagcgaggacggggccgaggacggcgcg
gaggacggcgacgatgcgcccgattccgagccggaggccgccgaggcggctctcggcgcc
gcggccgacccggacgagaccgcatcggacgccgacgccaacggcgaggacgccaacgga
cgccgccgtcgccgcggacgccggggcggtcgcggccgcggccggaccgagcgcaatggc
cgttcggattccgagcaggatgccgatgcggacgaggccggcgcggtgcgggccgcggag
gagtccgaggcgcatcccgaggagaccgcctccgataccctgccggtgggccccgaggag
ccgttcaacgatgccgatgtgagcaccgtctcgctcgccgccgagaacggcgccgcggcc
gagccgccgccggtcgtccccgcgccggagctcgagccgatccaggtcgagtcctttgcc
gaggccgcaaccgaggcggcagcgcccagcccggccaacgctgagcccgcgccggagccc
gtcgcggtggtgctgacgccgccggacccgaaccgtcccaagcgggccggctggtggtcg
cgcaccaaggcggcgctatcgggggagtga
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