Methylorubrum extorquens PA1: Mext_3891
Help
Entry
Mext_3891 CDS
T00640
Name
(GenBank) excinuclease ABC, A subunit
KO
K03701
excinuclease ABC subunit A
Organism
mex
Methylorubrum extorquens PA1
Pathway
mex03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
mex00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Mext_3891
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mex03400
]
Mext_3891
DNA repair and recombination proteins [BR:
mex03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
Mext_3891
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
Mext_3891
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UvrA_inter
UvrA_DNA-bind
ABC_tran
SMC_N
AAA_29
AAA_25
RsgA_GTPase
DnaJ_CXXCXGXG
nSTAND1
AAA_21
Motif
Other DBs
NCBI-ProteinID:
ABY32262
LinkDB
All DBs
Position
complement(4319528..4322809)
Genome browser
AA seq
1093 aa
AA seq
DB search
MRPQTGRNRPALPPYPFRSSGFAPPGTHLRPRILFLRGTPVARPSRERGRRNRGARIVAE
NLSSMAKAKARKPETAAKSKGRAEERTEAQLSALFDAAAPAARDTRVISVRGAREHNLKN
VDLTIPRDRFVVFTGLSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLEMMSKPDVDQI
DGLSPAISIEQKTTSKNPRSTVGTVTEIYDYMRLLWARVGIPYSPATGEPIESQTVSQMV
DRVLELPEKTRLYLLAPVVRGRKGEYRKEIAEFQKKGFQRLRIDGEYYAIDDVPKLDKKL
KHDIDVVVDRIVVRDDIAARLADSFETALELADGIADIEFADAPEGEAPKKITFSSRFAC
PVSGFTIPEIEPRLFSFNNPFGACPTCGGIGHEMRIDPELVISDTALTLKRGAVGPWAKS
TSPYYDQTLDALAKHFGFKTSVAWSALPEQARAVILFGTGKESVRFDYNDGLRSYSVNKP
FEGVIPNLERRYKETESDASREEIGRFMSATPCAACDGKRLKPEALAVKIDRQDIGQVTA
LSVREAHRWFSEISGKLTDKQNEIAVRILKEIRDRLTFLVDVGLEYLTLARGSGSLSGGE
SQRIRLASQIGSGLTGVLYVLDEPSIGLHQRDNERLLGTLKRLRDLGNSVIVVEHDEDAI
LQADYVVDVGPGAGIHGGEIVAQGTPEELLKDPASLTAKYLTGELSVRTPKARRKPGRGM
LRLVGARGHNLKNVTAEIPLGTFTCISGVSGGGKSTLIIDTLYKAAAKRLNGALEHPAPF
ERIEGLEHLDKVIDIDQSPIGRTPRSNPATYTGAFTPIRDWFAGLPEAKARGYQAGRFSF
NVKGGRCEACSGDGVIKIEMHFLPDVYVTCDVCKGKRYDRETLEVRYRDKSIADVLDMTV
EEAADLFKAVPSIREKMETLARVGLHYVRVGQQATTLSGGEAQRVKLSKELSKRATGRTL
YILDEPTTGLHFHDVAKLMEVLHELVDQGNTVVVIEHNLEVIKTADWVIDMGPEGGDGGG
RVVAQGTPEEIAASTASHTGRFLREVLARRPAGKAVKDAAKDSGKDAAKDAGKAKAGAAS
GRRSNAAGRQAAE
NT seq
3282 nt
NT seq
+upstream
nt +downstream
nt
ttgcggccgcaaaccggccgcaataggccggcattgccgccgtacccgttccgttctagt
ggtttcgcgccgcccggaacccatctccgtccccggatactgttcctgcgcggcacaccc
gttgcccgcccgagcagagagcgagggcgccgcaaccggggcgcccggatcgtcgcagag
aatttgtcgtccatggccaaagccaaagcccgcaagcctgagaccgcggccaagtccaag
ggaagggccgaggaacggaccgaagcacagctctcggccctgttcgacgcggcggccccg
gccgcgcgcgacacccgcgtcatctcggtgcgcggcgcccgcgagcacaatctcaagaac
gtcgacctgacgattccccgcgaccggttcgtggtgttcaccggcctatcgggttcgggc
aaatcgtcgctcgccttcgacacgatctatgcggaaggccagcgccgctacgtcgaatcg
ctctcggcctatgcccgccagttcctggagatgatgagcaagcccgacgtcgatcagatc
gacgggctctcgccggccatctccatcgagcagaagaccacctcgaagaacccgcgctcc
accgtcggcacggtgaccgagatctacgattacatgcgcctgctctgggcgcgggtcggc
atcccctactcgcccgccaccggcgagccgatcgagagccagaccgtcagccagatggtc
gatcgggtgctggaactgccggagaagacccggctgtacctcctcgcccccgtggtccgc
gggcggaagggcgagtatcgcaaggagatcgccgagttccagaagaagggcttccagcgc
cttcgtatcgacggcgagtactacgcgatcgacgacgtgccgaagctcgacaagaagctc
aagcacgacatcgatgtggtggtggaccgcatcgtcgtgcgcgacgacatcgccgcgcgg
ctggccgattccttcgagaccgcgctcgaactcgccgacggcatcgccgacatcgagttc
gccgatgcgccggagggcgaggcgccgaagaagatcacgttctcgtcgcgcttcgcctgc
ccggtctccggcttcaccatccccgagatcgagccgcggctgttctcgttcaacaacccg
ttcggcgcctgcccgacctgcggcggcatcggccacgagatgcggatcgaccccgaactg
gtgatctccgataccgcgctgaccctgaagcgcggcgcggtgggtccctgggcgaaatcg
acctcaccctattacgaccagacgctcgacgccctggccaagcatttcggcttcaagacc
tccgtggcgtggtcggcgctgccggagcaggcccgcgcggtgatcctgttcggcacgggc
aaggagtcggtgcgcttcgactacaatgacggcctgcgctcctactcggtcaacaagccg
ttcgagggcgtgatcccgaacctggagcggcgctacaaggagaccgagagcgacgcctct
cgtgaagaaatcggccgcttcatgagcgccaccccttgcgccgcctgcgacggcaaacgg
ctcaagcccgaggcgctcgcggtcaagatcgaccggcaggatatcggccaggttaccgcc
ctgtcggtgcgcgaggcgcatcgctggttctcggagatctcgggcaagctgacggacaag
cagaacgagatcgcggtccgcatcctcaaggagatccgcgaccgcctgaccttcctcgtc
gatgtcggcctcgaatacctgacgctcgcccgcggctcgggctcgctctcgggcggcgag
agccagcgtatccggctcgcctcgcagatcggttcgggcctgaccggcgtgctctacgtg
ctcgacgagccgtcgatcggcctgcaccagcgcgacaacgagcgcctgctcggcacgctc
aagcgcctgcgggatctgggcaactcggtcatcgtggtcgagcacgacgaggacgcgatc
ctccaggccgactacgtggtcgatgtcggcccgggcgccggcatccatggcggcgagatc
gtcgcgcagggcacgcccgaagagcttctgaaagacccggcctcgctcaccgcgaagtac
ctcaccggcgaactctcggtgcggacgccgaaagcccggcgcaagcccggacgcgggatg
ctgcggctggtgggcgcgcgcggccacaacctgaagaacgtgacggcggagatcccgctc
ggcaccttcacctgcatcagcggtgtctccggcggcggcaagtccacgctgatcatcgac
acgctctacaaggcggccgccaagcgcctcaacggcgccctggagcacccggccccgttc
gagcggatcgaggggttggagcatctcgacaaggtcatcgacatcgaccagtcgccgatc
ggccgcaccccgcgctcgaacccggcgacctataccggcgccttcaccccgatccgcgac
tggttcgccggcctgcccgaggccaaggcccgcggttatcaggccgggcgcttctcgttc
aatgtgaagggcgggcgctgcgaggcctgctcgggcgacggcgtcatcaagatcgagatg
cacttcctgcccgacgtctacgtcacctgcgacgtgtgcaagggcaagcgctacgaccgc
gagacgttggaggtgcgctaccgcgacaagtccatcgccgacgtgctcgacatgaccgtc
gaggaggcggccgacctgttcaaggccgtgccgtcgatccgcgagaagatggagacgctg
gcccgcgtcggcctgcactacgtccgcgtcggccagcaggcgaccacgctctcgggcggc
gaggcgcaaagggtgaagctctccaaggagctgtcgaagcgcgccaccggccgcaccctc
tacatcctcgacgagccgaccaccggcctgcacttccacgatgtcgccaagctcatggag
gtgctccacgagctggtcgatcagggcaacaccgtcgtggtgatcgagcacaatctggag
gtcatcaagaccgccgattgggtgatcgacatgggccccgagggcggcgacggcggcggc
cgcgtcgtggcgcagggcacgcccgaggagatcgccgcgagcacggcgagccataccggg
cgcttcctgcgcgaggtgctggcgcgccgcccggccgggaaggccgtcaaggacgcggcc
aaagactccggcaaggacgcggccaaggatgcgggcaaggcgaaggcgggcgccgcatcg
ggccgccgcagcaacgccgcgggccgtcaggccgccgaatag
DBGET
integrated database retrieval system
