Methylorubrum extorquens PA1: Mext_4018
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Entry
Mext_4018 CDS
T00640
Name
(GenBank) DNA-directed RNA polymerase, beta' subunit
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
mex
Methylorubrum extorquens PA1
Pathway
mex03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
mex00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
Mext_4018
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mex03021
]
Mext_4018
03400 DNA repair and recombination proteins [BR:
mex03400
]
Mext_4018
Enzymes [BR:
mex01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
Mext_4018
Transcription machinery [BR:
mex03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
Mext_4018
DNA repair and recombination proteins [BR:
mex03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
Mext_4018
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RnfC_N
ApbA_C
Motif
Other DBs
NCBI-ProteinID:
ABY32388
UniProt:
A9W8N9
LinkDB
All DBs
Position
4464896..4469113
Genome browser
AA seq
1405 aa
AA seq
DB search
MNQEVMNLFNQQAQPQSFDQIKISISSPEKILSWSYGEIKKPETINYRTFKPERDGLFCA
RIFGPIKDYECLCGKYKRMKYKGVICEKCGVEVTLARVRRDRMGHIELAAPVAHIWFLKS
LPSRIGLLLDMALKDLERILYFESYVVIEPGLTPLKERQLLSEEEYLRAQEEYGEDSFTA
MIGAEAIRRILMELDLEGIATSLKEEIATTTSELKPKKLMKRLKIIEAFQLSGNKPEWMI
LTVVPVIPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLIELRAPDIIIRNEKRM
LQEAVDALFDNGRRGRVITGANKRPLKSLADMLKGKQGRFRQNLLGKRVDYSGRSVIVVG
PELKLHQCGLPKKMALELFKPFIYARLDAKGFSATVKQAKKLVEKEKPEVWDILDEVIRE
HPVMLNRAPTLHRLGIQAFEPKLIEGKAIQLHPLVCAAFNADFDGDQMAVHVPLSLEAQL
EARVLMMSTNNILHPANGQPIIVPSQDIVLGLYYLSIVADGSVGEHKADDKNNPMQGVFG
DIGQLEHALAAKSVSLHSKIKWRWRGLGPDGEPVSRIYDTTPGRVILSGVLPMHPKVPFD
VVNKLMTKKEISAMIDTVYRHCGQKESVIFCDRIMALGFSHAFKAGISFGKDDMVVPENK
WSIVEDTRTLVKDYEQQYNDGLITQGEKYNKVVDAWAKCSDKLAAEMMGRISAVQKDENG
ADKQVNSIYMMSHSGARGSPAQMKQLAAMRGLMAKPSGEIIETPIISNFKEGLDVLEYFN
STHGARKGLADTALKTANSGYLTRRLVDVAQDAVIREVDCGTTNGIKMRAIIDAGQVVAP
LSIRILGRATAEDLVAQDGTVIVKTNETIEERHLPAINAAGIQEVKIRSVLVCQTKSGVC
ATCYGRDLARGTPVNMGEAVGVIAAQSIGEPGTQLTMRTFHIGGAAQIADSSFVESSFEG
TIKIRNRSLAKNSDGDLIATGRSVAVVIVGPDGTERAVHRLQYGARVRVDEGDTIKRGQR
IAEWDPYTRPIVAEVDGIVGYEDLYDGQSITETTDESTGIAKRVVIDWRGSSRTSDLKPA
MLVLDQDGKPVKLARGSDARYYLPVDAIIGLDPGAKVRAGDVLARVSTDSAKTRDITGGL
PRVAELFEARRPKDAAIIAEKSGSIAFGRDYKNKRRLTLTPHDGSDAVEYLIPKGKHIHL
QDGDVVELGDYIVDGNPAPHDILAIKGVEELAAYLVNEIQEVYRLQGVSINDKHIEVIVR
QMLQKVEITDGGDSDILTGDQIDRTELADFNEKLLAEGKKPIQGVPVLLGITKASLQTKS
FISAASFQETTRVLTEAAVNGKVDTLDGLKENVIVGSLIPAGTGSLAADIRSIARRRDNL
ILQQRSAENAANAAELSELPPAAAE
NT seq
4218 nt
NT seq
+upstream
nt +downstream
nt
atgaaccaagaggtcatgaaccttttcaatcagcaggcccagccgcagagcttcgaccag
atcaagatctcgatctcgtcgcccgagaaaattctgtcttggtcctacggcgagatcaag
aagcccgagacgatcaactaccgtacctttaagcccgagcgcgacggcctgttctgtgcg
cgcatcttcgggccgatcaaggattacgagtgcttgtgcggcaagtacaagcgcatgaag
tacaagggcgtcatctgcgagaagtgcggcgtcgaggtcaccctcgcgcgcgtccgtcgc
gaccgcatgggccatatcgagctggccgcccccgtcgcccatatctggttcctgaagtcg
ctgccgagccgcatcggcctgctgctcgacatggcgctcaaggaccttgagcggatcctg
tacttcgagtcctacgtcgtcatcgagccgggcctcacccccctgaaggagcgtcagctc
ctctcggaggaagagtacctgcgcgcgcaggaggagtacggcgaggactcgttcacggcg
atgatcggcgccgaggcgatccggcgcatcctgatggaactcgacctcgagggcatcgcg
acgtcgctcaaggaggagatcgcgacgacgacctccgagctgaagcccaagaagctgatg
aagcgcctcaagatcatcgaggcgttccagctctcgggcaacaagcccgagtggatgatt
ctgacggtcgtgcccgtcatcccgccggacctgcgcccgctggtcccgctggacggcggc
cgcttcgccacgtccgacctcaacgacctctatcgccgcgtcatcaaccgcaacaaccgc
ctcaagcggctgattgagctgcgcgcgccggacatcatcatccgcaacgagaagcgcatg
cttcaggaagcggtcgatgcgctgttcgacaacggccgccgcggccgcgtcatcacgggt
gccaacaagcgcccgctgaagtcgctcgccgacatgctgaagggcaagcagggccgcttc
cgccagaacctgctcggcaagcgcgtcgattactccggccgttcggtcatcgtggtcggc
cccgagctgaagctgcaccagtgcggcctgccgaagaagatggcgctcgagctgttcaag
ccgttcatctacgcgcgcctcgacgccaagggtttctccgccaccgtcaagcaggcgaag
aagctcgtcgagaaggagaagcccgaggtttgggatatcctggatgaggtcatccgcgag
catcccgtcatgctcaaccgcgcgccgacgctgcaccgcctcggcatccaggcgttcgag
ccgaagctgatcgagggcaaggcgatccagcttcacccgctggtctgcgccgcgttcaac
gccgacttcgacggcgaccagatggccgtgcacgttcccctgagccttgaggctcagttg
gaggcgcgcgtcctgatgatgtcgaccaacaacatcctgcacccggccaacggtcagccg
atcatcgtgccgtcgcaggacatcgtcctcggcctctactacctctcgatcgtcgccgac
ggctcggtcggcgagcacaaggccgacgacaagaacaacccgatgcagggcgtgttcggc
gatatcggtcagctcgagcacgcgctcgcggccaagtccgtctcgctgcactcgaagatc
aagtggcgctggcgcggcctcggccccgatggcgagcccgtgtcccggatctacgacacc
acgccgggccgcgtgatcctgtccggcgtgctgccgatgcacccgaaggtgcccttcgac
gtcgtcaacaagctgatgacgaagaaggagatctcggcgatgatcgacaccgtctaccgc
cactgcggtcagaaggagtcggtgatcttctgcgaccgcatcatggcgctcggcttcagc
cacgcgttcaaggccggcatctcgttcggcaaggacgacatggtcgtgccggagaacaag
tggtcgatcgtcgaggacacccgcacgctcgtgaaggattacgagcagcagtacaacgac
ggcctgatcacccagggcgagaagtacaacaaggtcgtcgatgcctgggccaagtgctcg
gacaagctcgctgccgagatgatgggccggatctccgccgtccagaaggacgagaacggg
gccgacaagcaggtcaactcgatctacatgatgagccactcgggcgcccgtggttcgccc
gcgcagatgaagcagctcgcggcgatgcgcggcctcatggccaagccgtcgggtgagatc
atcgagacgccgatcatctcgaacttcaaggaaggcctcgacgttctcgagtacttcaac
tccacccacggtgcccgtaagggtctcgcggacacggcgttgaagaccgcgaactcgggc
tacctgacgcgtcgtctggtcgacgtggcgcaggacgcggtcatccgcgaggtcgattgc
ggcacgaccaacggcatcaagatgcgcgccatcatcgatgccggccaggtcgtcgccccg
ctctccatccgtatcctgggccgcgccacggccgaggatctggtggcgcaggacggcacc
gtcatcgtcaagacgaacgagacgatcgaggagcgtcacctgccggcgatcaacgccgcc
ggcatccaggaggtgaagatccgctcggtgctggtctgccagaccaagagcggcgtctgc
gccacctgctacgggcgcgatctggcccgtggcacgcccgtcaacatgggcgaggccgtc
ggcgtcatcgcggcgcagtcgatcggcgagccgggcacccagctcaccatgcgtaccttc
cacatcggcggtgcggcgcagatcgcggattcgtccttcgtcgagtcgagcttcgagggc
acgatcaagatccgcaaccgctcgctcgccaagaactcggacggcgacctcatcgctacc
ggccgttcggtcgcggtggtgatcgtcgggccggacgggaccgagcgggcggttcaccgc
ctgcaatacggtgcccgtgtgcgcgtggacgagggcgacacgatcaagcgcggccagcgg
atcgcggagtgggacccctacacccgtccgatcgtcgccgaggtggacggcatcgtcggc
tacgaggatctctatgatggccagtccatcaccgagaccaccgacgagtcgaccggcatc
gccaagcgcgtcgtcatcgactggcgcggttcgtcccgcacctccgacctgaagccggcc
atgctcgtgctggatcaggacggcaagccggtgaagctggcccgcggttcggacgcccgc
tactacctgccggtcgatgccatcatcggtctcgatccgggtgcgaaggtgcgggccggc
gacgtgctcgcccgtgtctcgacggactcggccaagacccgcgacatcaccggcggtctg
ccgcgggtggcggagctgttcgaggcgcgtcgtccgaaggatgcggcgatcatcgccgag
aagtcgggctcgatcgccttcggccgcgactacaagaacaagcgtcgtctgacgctgacg
ccgcacgacggctccgatgccgtcgagtatctgatcccgaagggcaagcacatccacttg
caggacggggacgtggtggaactcggcgactacatcgtcgacggcaacccggcgccgcac
gacatcctggcgatcaagggcgtggaggagcttgccgcctacctcgtcaacgagatccag
gaggtctaccggctccagggcgtgtcgatcaacgacaagcacatcgaggtcatcgtccgg
cagatgctgcagaaggtggaaatcaccgacggcggcgactccgacatcctcacgggcgat
cagatcgaccgcaccgaactggccgacttcaacgagaagctcctcgccgagggcaagaag
ccgatccagggcgtgcccgtcctgctcggcatcaccaaggcgtcgctgcagacgaagtcg
ttcatctcggcggcctcgttccaagagaccacccgcgtcctcacggaggcggcggtcaac
ggcaaggtcgataccttggacggcctgaaggagaacgtcatcgtcggctcgctcatcccg
gccggcaccggctcgctcgcggcggacatccgctccatcgcgcgccgccgtgacaacctg
atccttcagcagcgctccgccgagaacgcggccaacgccgccgaactcagcgagctgccc
ccggcggcggccgagtaa
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