Methylorubrum extorquens PA1: Mext_4163
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Entry
Mext_4163 CDS
T00640
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
mex
Methylorubrum extorquens PA1
Pathway
mex03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
mex00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Mext_4163
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mex03400
]
Mext_4163
Enzymes [BR:
mex01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Mext_4163
DNA repair and recombination proteins [BR:
mex03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
Mext_4163
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
Helicase_C
UvrB_inter
CarD_TRCF_RID
ResIII
MFD_D3
Cas3-like_C_2
SecA_DEAD
AAA_16
RecG_dom3_C
AAA_22
PBP_like_2
Motif
Other DBs
NCBI-ProteinID:
ABY32532
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Position
4632136..4635726
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AA seq
1196 aa
AA seq
DB search
MAKPQPKPPVPKPQTARFALPKSAPLTKALDAIKRGDSPTLASVPDGFDALVAADLARAL
SGSFEGPAVLVHVARDSGRSNAFQNALKFVAPEIEAMSVPAWDCQPYDRVSPNGAIAAQR
MTALSRLTRSRSSEEKPRILCTTVNALVQRVPPRSRVAVETFSAAIGNVVPMDKVVAWVE
ANGFLRTGTVRDTGEYAVRGGILDLSPPGLPNPIRLDFFGDTLESIRAFDPETQRTVGSL
RSLDLVPMSEVQLTTETIRRFRQGYLSSFGAATRDDRLYETVSEGRRYAGLEHWMPLFYD
GLDTLFDYLGDVPMLFDPQVEEAATERLALIQDYFQAREAALKNPQSGVAPYKPLPPRAL
YLTPNEWKSKVESGTVVRLTPFATPDSDERAVIDCGARAGRSFAPERADDAASVFDAAVA
HIRDLQASGHHVILGSWSEGSRDRLCGVLTDHGLKKPTVINTFAAVNALKRGTDVAVAVW
GLESGFTLDRLAVVAEGDILGDRLVRQKRKSKRPQDIILEVQALQPGDLVVHADHGIGRF
VTLKTVTAAGAPHDCLELQYAGGLLLLPVENIELLTRYGSEDSEVALDRLGGGAWQARKA
KMKRRILEMAGDLIKIAAARFVKSAPSLKAPEGLYEEFAARFAFQETEDQANAIDAVLDD
LNAGRPMDRLVCGDVGFGKTEVALRAAFAAAISGKQVAVVVPTTLLARQHFRTFAERFKG
LPINVAQLSRFVSAGDQRQNRAGLADGTVDIVVGTHALLAKNVAFKDLGLIIVDEEQHFG
VAHKERLKALQADVHVLTLSATPIPRTLQLAMTGVRELSIIATPPMDRLAVRTFVTPFDP
LLVREALLRERYRGGQSFYVAPRIEDLAEVKRFLDTEMPETTVAVAHGQMAAGQLEDVMT
AFYEGKYDVLLSTTIVESGLDIPTANTLIVHRADMFGLAALYQLRGRVGRSKARAYALFT
TPANRQLTTQAEQRLKVLQSLDTLGAGFQLASHDLDIRGAGNLLGDAQSGHIKEVGYELY
QQMLEDAVTALKAGIEEPVEEAWSPTIALGAPVTIPEDYVEDLTVRLGLYRRLSTLENDA
EMESFGAELIDRFGPLPPEVEQLLKIVTIKILCRDANVEKVEAGPKGVVVHFRDKSFANP
QGLAAMVVEQGSFAKVRPDMSVVFIRELDGIPRRLKETTQILRGLVTIAKRAKKAA
NT seq
3591 nt
NT seq
+upstream
nt +downstream
nt
atggccaagccccaacccaagccacccgttccgaagccgcagaccgcgcgcttcgccctg
ccgaaatcggcgcccctgaccaaggccctcgatgcgatcaagcgcggcgacagcccgacg
ctggcgagcgtccccgacggcttcgatgcgctggtggcggccgacctcgcccgcgcgctg
tccggttcgttcgaggggccggcggtgctggtccacgtcgcccgtgattccggccgctcc
aacgccttccagaacgcgctgaaattcgtcgcccccgagatcgaggcgatgagcgttccg
gcctgggactgccagccctacgaccgggtgtcgccgaacggggccatcgccgcccagcgc
atgaccgcgctgtcgcggctgacccgttcgcgctcgtcggaggagaagccgcgcattctc
tgcaccaccgtcaacgccctggtgcagcgggtgccgccgcggtcgcgcgtggccgtcgag
accttctcggcggcgatcggcaacgtggtgccgatggacaaggtcgtggcctgggtggaa
gcgaacggcttcctgcgcacgggaacggtgcgcgatacgggcgaatacgccgtgcgcggc
ggcatcctcgacctgtcgccccccggcctgccgaacccgatccgcctcgacttcttcggc
gacacgctcgaatcgatccgcgccttcgatcccgagacgcagcgcacggtggggtcccta
cgctctctcgacctcgtgccgatgagcgaggtgcagctcaccaccgagacgatccggcgc
ttccggcagggctatttgtcgagcttcggcgcggcgacccgtgacgaccggctctacgag
acggtgagcgagggccggcgctacgccggcctcgagcactggatgccgctgttctacgac
ggcctcgacaccctgttcgactatctcggcgacgtgccgatgctgttcgacccgcaggtg
gaggaggcggccaccgagcggctcgccctgatccaggactatttccaggcccgcgaagcg
gcgctgaagaacccgcagagcggcgtcgcgccctacaagccgttgccgccgcgcgcgctc
tacctcacgcccaacgagtggaagagcaaggtcgagtccggcacggtggtccggctcacc
cccttcgcgacgccggattccgacgagcgcgcggtcatcgattgcggcgccagggcgggg
cgaagcttcgcgcccgagcgggccgacgacgcggccagcgtgttcgacgcggcggtcgcg
catatccgcgatctccaggcatccgggcatcacgtgatccttggatcctggtccgagggc
tcgcgcgaccggctctgcggcgtgctgaccgatcacgggctcaagaagccgacggtgatc
aacaccttcgccgcggtcaacgcgctcaagcgcggcaccgacgtggcggtcgcggtctgg
gggctggaatccggcttcaccctcgaccggctcgcggtggtggccgagggcgacatcctg
ggcgaccggctggtgcgccagaagcgcaagtccaagcgcccgcaggacatcatcctggag
gtgcaggcgctccagcccggcgatctcgtggtccatgccgaccacggcatcggccgcttc
gtcacgctcaagaccgtcaccgcggcgggcgcgccgcacgattgcctcgaactgcaatat
gccggcggcctgctgctgctgccggtcgagaacatcgaactcctaacccgctacggctcc
gaggattcggaggtcgcgctggaccgcctgggcggcggcgcctggcaggcccgcaaggcc
aagatgaagcgccgcatcctcgagatggccggcgacctcatcaagatcgccgccgcgcgg
ttcgtgaagtccgcccccagcctcaaggcgccggaggggctctacgaggaattcgccgcc
cgcttcgctttccaggagaccgaggatcaggccaacgccatcgacgcggtgctcgacgac
ctcaacgcggggcgtccgatggaccgcctcgtctgcggcgatgtcggcttcggcaagacc
gaggtggccctgcgcgccgccttcgccgcggcgatctccggcaagcaggtggcggtggtg
gtgcccaccacgctgctcgcccgccagcattttcgcacgttcgccgaacggtttaagggc
ctgccgatcaacgttgcgcagctctcccgcttcgtctcggccggcgatcagcgccagaac
cgggccgggctcgccgacgggacggtcgacatcgtcgtcggcacccatgccctgctcgcc
aagaacgtcgcgttcaaggatctcggcctcatcatcgtcgacgaggagcagcatttcggt
gtcgcccacaaggagcggcttaaggcgctccaggcggatgtccacgtgctgacgctctcg
gccaccccgattccgcgcacgctgcagctcgccatgacgggtgtgcgcgaactctcgatc
atcgccacccccccgatggatcggttggcggtgcgcaccttcgtgacgccgttcgatccg
ctgctggtccgcgaggcgctgctgcgcgaacgctatcgcggcggccagtcgttctacgtc
gccccgcgcatcgaggacctggccgaggtcaaacgcttcctcgataccgagatgcccgag
accaccgtcgcggtcgcccacggccagatggcggcgggccagctcgaggacgtgatgacg
gcgttctacgagggcaagtacgacgtgctgctctcgaccacgattgtcgaatccggcctc
gacatcccgaccgccaacacgctgatcgtgcaccgggccgacatgttcggtctggccgcg
ctctaccagttgcgcgggcgcgtcggccgctcgaaggcgcgggcctacgccctgttcacg
acgccggccaaccgccagctcacgacccaggccgaacagcgcctgaaggtgctccagagc
ctcgacacgctgggcgccggcttccagctcgcgagccacgatctcgacatccgcggcgcc
ggcaacctcctgggcgatgcccagtccggccacatcaaggaagtcggctacgagctctac
cagcagatgctggaggatgcggtcaccgccctcaaggctggcatcgaggagccggtggag
gaggcgtggtcgccgaccatcgcgctcggcgctccggtcacgatccccgaggactacgtc
gaggacctgaccgtccggctcggcctctaccggcgcctctcgaccctcgagaacgatgcc
gagatggagagcttcggtgccgagctgatcgaccgcttcggcccgctgccgccggaggtg
gaacagctcctgaagatcgtgaccatcaagatcctgtgccgcgacgccaatgtcgagaag
gtcgaggccgggccgaagggcgtggtggtccacttccgcgacaagtccttcgccaacccg
caggggctcgccgccatggtcgtggagcagggctccttcgccaaggtgcggcccgatatg
agcgtcgtgttcatccgcgaactcgacggcatcccgcggcggctgaaggagacgacgcag
atcctgcgcgggctcgtcacgatcgccaagcgcgccaagaaggccgcctga
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