Martelella endophytica: TM49_14290
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Entry
TM49_14290 CDS
T03801
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
mey
Martelella endophytica
Pathway
mey03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mey00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
TM49_14290
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mey03019
]
TM49_14290
03400 DNA repair and recombination proteins [BR:
mey03400
]
TM49_14290
Enzymes [BR:
mey01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
TM49_14290
Messenger RNA biogenesis [BR:
mey03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
TM49_14290
DNA repair and recombination proteins [BR:
mey03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
TM49_14290
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
DEAD
HRDC
Helicase_C
RecQ_Zn_bind
NP1-WLL
Motif
Other DBs
NCBI-ProteinID:
AJY46580
UniProt:
A0A0D5LRK8
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All DBs
Position
complement(3126089..3127930)
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AA seq
613 aa
AA seq
DB search
MSLTDPLFTAPSEPLAVLKSVYGYPAFRGKQQAVVEQVVAGGDAVVLFPTGAGKSLCYQV
PSLCRPGVGVVISPLIALMRDQVEALKQLGVNAAALNSSISREDYGAVRRALDAGTLDLL
YVTPERVATPGFREMMANVEIALFAIDEAHCVSQWGHDFRPEYRALDALRETFPGVPRMA
LTATADPHTREDIIARLGLEDAAVFTTSFDRPNITYEIVERDQPRRQLLEFLNRHKGASG
IVYCLSRAKVDETSEWLNGQGIPSLPYHAGMTREDRDANQDAFLKEEELCLVATVAFGMG
IDKPNVRYVAHLDLPGSVEAYYQETGRAGRDGLPSEAWMAYGMADVVQRGKMIERGTAGE
EIKRVERAKLNALLGICETAGCRRQALLAHFGEAHPGGCGNCDTCLKPVDTWEGTEAAIK
ALAAIYRTGERFGAGHVIDVLTGNETERTERFGHNSMPVFGAGRDLPVKTWQSVYRQLLA
MGLIRVDHEAYGAMKLEAEARAVFRHERTIRFRSDRPTRGKAAKSASSARSREAKAALSA
ENQSLFEALRATRTALAKDLSVPPYVIFPDTTLIALATERPETPEDMLQVSGVGNSKLAR
FGEDFLAVIRSHG
NT seq
1842 nt
NT seq
+upstream
nt +downstream
nt
atgtccctcaccgatccgcttttcaccgctcccagcgaaccgctcgccgtgctcaagtcc
gtctatggctacccggcctttcgcggcaagcagcaggcggtggtcgaacaggtggttgcc
ggcggtgatgcggtggtgctgtttccgacgggtgcgggcaaatcgctctgctatcaggtg
ccctcgctctgccgccctggcgtcggcgtggtgatctcgccgctgatcgcgctgatgcga
gaccaggtcgaggcgctgaagcagctcggcgtcaatgcagcggcactgaactcgtcgatc
tcgcgggaagattacggcgctgtccgccgcgcgcttgacgccggcacgctcgatcttctc
tatgtgacgcccgagcgggtcgccacccccggtttccgcgagatgatggcaaatgtcgag
atcgctctgttcgccatcgacgaggcccattgcgtctcgcagtggggccatgacttccgg
ccggaataccgcgcgctcgacgcgctgcgcgagacctttcccggcgtgccgcgcatggcg
ctgacggcaaccgccgacccgcacacccgcgaggacatcatcgcgcggctcgggcttgag
gacgctgccgtcttcaccacctccttcgaccggccaaacatcacctacgagatcgtagag
cgcgaccagccccgccgccagcttctcgaattcctcaaccgccacaagggcgcaagcggc
atcgtctattgcctttcccgcgccaaggtggatgaaacgtcggagtggctgaatgggcaa
ggcatcccgtccctgccctatcatgcgggcatgacccgcgaagaccgcgacgccaaccag
gatgccttcctcaaggaagaagaactctgccttgtcgccacggtcgccttcggcatgggc
atcgacaagccgaatgtccgctatgtcgctcatctcgacctgccagggtcggtggaagcc
tactatcaggaaaccggccgcgccggccgcgacggcctgccgtctgaagcctggatggcc
tatggcatggccgatgtcgtccagcgcggcaagatgatcgagcggggtaccgcaggcgag
gaaatcaagcgcgtcgaacgcgccaagctgaacgccctgctcggcatctgcgagacagca
ggatgccggcggcaggcgctgcttgcccatttcggagaggcccatcccggcgggtgcggc
aattgcgacacctgcctgaagccggtcgacacctgggagggcacggaagccgcgatcaag
gcgcttgcggcgatctaccgcaccggcgaacgcttcggtgccgggcacgtcattgatgtg
ctcaccggtaacgagaccgaacggaccgaacgcttcggccacaattccatgcccgtcttc
ggcgccggccgcgacctgccggtcaagacctggcaatcggtctaccgccagcttctggcc
atggggctcatccgcgtcgaccacgaggcctatggcgcgatgaaactggaagcggaagcg
cgcgccgtgttccggcatgaacgcaccatccgcttccgctcagaccggccgacccgcggc
aaggcggcgaaatcggcctcctctgcccgttcgcgcgaggccaaggccgcactttcggcc
gaaaaccagtcactgtttgaggcactgcgcgcgacccgcacggcgctggcgaaggacctg
tcggtcccgccctatgtgatcttccccgatacgacgctgattgcgctcgcgaccgagcgt
cccgaaacgccggaagacatgctgcaggtctccggcgtcggcaacagcaagctcgcccgc
ttcggcgaggattttctggcggtgatccgcagccacggctag
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