Martelella endophytica: TM49_16255
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Entry
TM49_16255 CDS
T03801
Name
(GenBank) DNA helicase UvrD
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
mey
Martelella endophytica
Pathway
mey03420
Nucleotide excision repair
mey03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
mey00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
TM49_16255
03430 Mismatch repair
TM49_16255
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mey03400
]
TM49_16255
Enzymes [BR:
mey01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
TM49_16255
DNA repair and recombination proteins [BR:
mey03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
TM49_16255
MMR (mismatch excision repair)
Other MMR factors
TM49_16255
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
Viral_helicase1
AAA_12
DUF134
Motif
Other DBs
NCBI-ProteinID:
AJY46874
UniProt:
A0A0D5LRS9
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All DBs
Position
3536075..3537871
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AA seq
598 aa
AA seq
DB search
MSSVSSNRALFLKAAEDLRSNDKQWQAYEAAGHCVLLAGPGSGKTKTLTVKLARMLSEDV
DEPRGIACITYNNECARELESRLETLGIAPGGRVFIGTVHSFSLTQILLPYAKVAGLGLP
DEFKVATRQEARAALAAAHAQVIGGPENPQNWDMRLGRHRRRFLNRELPEWRTLDPELTE
LVEAYEAELRARRLIDFDDMPLLAVRALAANEWLRTAMVAKYPILAVDEYQDLGRALHGM
VMGLCFSAGMRLFAVGDIDQSIYGFTGATPELLRRLSERDDVETVRLGLNYRCGSRIVSA
SEYALGENRGYKAPDGAHEGTIYFHPCTGGHAGHARYLVEELISEIRERRPGTNLGEIAV
LYPAAFLGDEVANAAAKHGYSVIRTDGNALYPRGSRLMRWLEQCAMWCCGGWRSGRPRLS
RVVSEGARLFHETIIDEDERLTFQRDVTAALWDRRDETLSLSDWLAALRDEIIRPRVDLA
RSLADELGILNDFLNRIGPDGDVDDFPLGEFAGIGSGLDRLNLSTLHSAKGREFDVVILF
GVDEGRLPRNNATENDVREARRLFYVGFTRARHEIHLVYAQHNPSRFVTEVQERLEGE
NT seq
1797 nt
NT seq
+upstream
nt +downstream
nt
atgtcatccgtctcgtctaacagggcactttttcttaaggcggcagaggatctgcgttct
aatgacaagcagtggcaggcctatgaagctgcggggcattgcgtgttgctggctgggcca
ggcagcggcaaaaccaagacgctgacggtcaaacttgccagaatgcttagcgaagatgtg
gacgagccacgcggtattgcctgtatcacctacaataacgaatgtgcacgggagcttgaa
agccgcttggaaacgctaggcatcgcacccggcggacgcgtttttatcggaaccgttcac
tcattctcactcacacaaattctgctaccctacgctaaagtggccggactgggcctaccc
gatgaattcaaagtggcgactcggcaggaggctcgagccgcattggcggccgctcatgcg
caggtaataggtggaccggagaacccgcagaactgggacatgcggctcggccgtcatcgt
cgccgcttcctcaatcgcgagctgccggagtggagaacgctcgatcccgagcttaccgaa
ctggtcgaggcgtacgaagccgaacttcgcgcacgccgactgatagattttgacgacatg
ccgctcctcgcagtgcgtgcgcttgccgccaatgagtggcttagaacggcgatggtggcg
aaatatccgatcctagctgtagacgagtatcaagacttgggccgtgcgttgcacggtatg
gtcatgggcctctgcttcagcgcgggcatgcggttgttcgcggtcggcgatatcgaccag
tccatctatggctttaccggcgcaacgccagagttgctgcgacgactgtccgagcgcgat
gacgtcgaaacggtgcgactaggtctcaactatcgctgcggctcgcggattgtcagcgcg
tccgaatacgcgctcggagagaaccgaggctataaggcgcccgacggtgcccatgaggga
acgatatatttccatccctgcacaggcggccatgccgggcacgcacgatatctcgtcgag
gaactgatctctgagatccgcgagcgtcgacccggcaccaatcttggcgagatcgccgta
ctgtatcctgcggcattcctcggtgacgaagtcgccaacgcggctgcaaagcatggctat
tccgtaatccgaaccgatggcaacgcgctttatccgcgcggcagcaggttgatgcgatgg
ctggagcaatgcgcaatgtggtgctgcggggggtggcgatctgggaggccccggctgtct
cgtgtagtaagcgaaggagccaggctattccacgaaactataatcgatgaggatgagcgg
ctcacctttcaacgtgacgtcaccgctgcgttatgggatcggcgggacgaaacgctcagc
ctctccgattggctggcagctctgcgtgatgaaatcattcgtccccgggtcgatctcgcc
cgatcactcgctgatgaacttggcatcctaaacgacttcctcaatcgtatcggtccagac
ggcgatgtcgatgattttccgctgggtgagtttgcgggaattgggagcggccttgatcgt
ctcaatctttcgacactgcacagtgccaaggggcgcgaattcgatgtggtaattctgttc
ggcgtggatgaaggccgattgccgcgcaacaatgctacggagaacgacgtccgtgaggct
cgacgcctcttctatgtcggcttcacgcgtgcgcggcatgagattcatcttgtgtatgcc
cagcacaacccgtcgcgcttcgtgacagaagtccaggagcgcctcgaaggtgaatga
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