Martelella endophytica: TM49_21465
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Entry
TM49_21465 CDS
T03801
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
mey
Martelella endophytica
Pathway
mey03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mey00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
TM49_21465
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mey03019
]
TM49_21465
03016 Transfer RNA biogenesis [BR:
mey03016
]
TM49_21465
Enzymes [BR:
mey01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
TM49_21465
Messenger RNA biogenesis [BR:
mey03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
TM49_21465
Transfer RNA biogenesis [BR:
mey03016
]
Prokaryotic type
tRNA degradation factors
TM49_21465
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
S1
LIP-1
Motif
Other DBs
NCBI-ProteinID:
AJY47656
UniProt:
A0A0D5LUB6
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All DBs
Position
4599293..4601581
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AA seq
762 aa
AA seq
DB search
MSAKPTASRSRKPDEIIHGQVPPRDVLLKFIADNPDQASKRDIAKAFGIKGEDRVVLKAM
LRELEDDGLLQKKRKSLMRPGALPPVTVLDITTRDKDGELIGRPAEWPVEEGAAPAVLIR
QQGGGKNGRRKPATAGLGDRILAKIFPSKSETGPAYTARIIKVIDKRRTAALGVVRMLDD
GSARLMPIERRDSEVELADLAGAKDGDLVEVDIQRSGRYGLARGSVLSVVGSLASEKAVS
MIAIHAHGIPHIFPKEVLDAAEAAQPATMSHREDWRDLPLVTIDPADAKDHDDAVYAEPD
TRPENEGGVIVTVAIADVSYYVRPKSALDREALKRGNSVYFPDRVVPMLPERISNDLCSL
REGEDRPALAVRMVFSKEGRKASHTFHRIMMKSAAKLSYQQAQAAIDGTTDDKTGPLLEP
VLKPLWAAYRTMTIGRDRRQPLELDMPERRILLKGDGTVDKVVVPPRLDAHKLIEEMMIQ
ANVAAAETLEQKRQALIYRTHDAPSLAKQETLREFLATLSIPLAKGGNLRANSFNGILSK
AEDSPHKDIVNQMVLRSQSQAVYSPENIGHFGLNLMKYAHFTSPIRRYADLIVHRALVAS
LNLGEGGLTAEEEAQLDDIAAEISTFERRAMAAERETVDRLIAHHLAGRIGESFDGRVAG
VTRSGLFIALPEYGADGFVPVSTLGSDYFVHDEVRQALVGERTGLGYQLGDDVEVQLVEA
IPLAGALRFDMLSSGKKLPAATRSFHKSKRGRPMRGGRPGRR
NT seq
2289 nt
NT seq
+upstream
nt +downstream
nt
ttgagcgcaaaaccgaccgcctcccggtcccgcaagccggatgagatcattcacggacaa
gtgccgccgcgcgatgtgctcttgaagttcatcgccgacaatcccgaccaggcctccaag
cgcgacatcgccaaggccttcgggatcaagggcgaggaccgcgtcgtactgaaagctatg
ctgcgcgagctggaggacgacggccttctgcagaagaagcggaaaagcctgatgcggccg
ggcgccctgccccctgtcaccgtgctcgacatcaccacccgcgacaaggacggcgagctg
atcggccgccccgccgagtggcctgtcgaggaaggcgcggcccccgccgtgctgatccgc
cagcagggcggcggcaagaatggcaggcgcaagccggccaccgccgggctcggcgatcgc
atccttgccaagatatttccctccaagtccgagaccggcccggcctacacggcccgcatc
atcaaggtcatcgacaagcgccgcaccgccgcgctcggcgtcgtgcgcatgctcgatgac
ggctcggcccgactgatgccgatcgaacgtcgcgacagcgaggtcgagcttgccgacctt
gccggcgccaaggatggcgatctcgtggaagtcgatatccagcgatcgggccgatacggt
ctcgcacgcggctcggtgctctccgtggtcggttcgttggcgtcggaaaaggcggtctcg
atgatcgcgatccacgcccatggcattccgcacatcttcccgaaggaagtgctcgacgct
gccgaggcggcacaacccgccaccatgtcgcaccgcgaggactggcgcgacctgccgctc
gtcaccatcgaccccgccgacgccaaggaccatgacgacgccgtctacgccgagccggac
acgcggccggaaaacgaaggcggcgtgatcgtcaccgtcgcgattgccgacgtctcctat
tatgtccgcccgaaatcggcgctggaccgcgaggcgctgaagcgcggcaattcggtctat
ttcccggatcgcgtcgtgccgatgctgcccgagcggatttccaacgacctctgctcgctg
cgcgagggcgaggaccggccggcgcttgccgtgcgcatggtcttttccaaggagggtcgc
aaggcctcccacaccttccatcgcatcatgatgaagagtgcggcgaagctctcctaccag
caggctcaggccgccatcgacggcaccaccgacgacaagaccggcccgctgctcgaaccg
gtgctgaagccgctctgggccgcctacaggacgatgacgatcggccgcgaccgtcgtcag
ccgctcgaactcgacatgccggagcgccgcattctgctgaagggcgacggcacggtcgac
aaggtggtggtgccgccccgcctcgatgcgcacaagctcatcgaggagatgatgatccag
gcgaatgtcgctgcggccgaaacgctggagcagaagcgtcaggcgctgatctaccgcacc
catgacgcgccgtcgcttgccaagcaggagacgctgcgcgagttcctggcgacgctctcc
atcccgctggcgaagggcggcaatctgcgcgccaattcgttcaacggtatcctgtcgaaa
gccgaggacagcccgcacaaggacatcgtcaaccagatggtgttgcgctcgcagagccag
gcggtttactcgccggaaaatatcgggcatttcggcctgaacctgatgaaatatgcccat
ttcacctcaccgatccgccgttatgccgacctgatcgtccatcgcgcgctggtcgcctcg
ctcaatctcggcgaaggcgggctgacggccgaggaagaggcgcagctcgacgacatcgcc
gccgagatctcgaccttcgaacgccgcgccatggccgccgaacgcgagaccgtcgaccgg
ctgatcgcccatcatctggccggccgcatcggcgagagcttcgatggccgcgtggccggc
gtcacccgctccggcctgttcatcgcgctgccggaatatggcgccgacggctttgtcccc
gtttcgacactcggcagcgactatttcgtccacgacgaggtacgccaggcgctggtcggc
gagcggaccggccttggctatcagctcggcgatgatgtcgaggtgcagctcgttgaggcg
atcccgcttgcaggggcactgcgcttcgacatgctgagctccggcaagaaactgccggcg
gcaacccgctcgttccacaaatcgaagcgcggccgcccgatgcgcggaggcaggcccggc
aggcgctga
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