Methanobrevibacter sp. YE315: TL18_00630
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Entry
TL18_00630 CDS
T04279
Name
(GenBank) RNA-binding protein
KO
K07573
exosome complex component CSL4
Organism
meye
Methanobrevibacter sp. YE315
Pathway
meye03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
meye00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
TL18_00630
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
meye03019
]
TL18_00630
Messenger RNA biogenesis [BR:
meye03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
TL18_00630
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Core exosome
TL18_00630
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ECR1_N
EXOSC1
RRP4_S1
S1
CsrA
RRP40_S1
ECR1_N_2
Zn_ribbon_FGT1_1
DUF5816
Motif
Other DBs
NCBI-ProteinID:
AMD16671
UniProt:
A0A125RAD1
LinkDB
All DBs
Position
complement(140719..141288)
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AA seq
189 aa
AA seq
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MNIEDEQIVMPGDKLGIIEQYLPGEGTYDDNGEIKSSVLGNVKINQKMKVISVVSDAKPA
LLKVGDIVYGQITDIKPQRANVNIECIKDNARPLALPYMGAIHISQAKKDYLEKLSDAFR
IGDIIQAKVIKITGDNVDLGTVDDDCGVLKAMCTRCRDFMHTTQKVNELQCNTCNKKEKR
KVSNNYVND
NT seq
570 nt
NT seq
+upstream
nt +downstream
nt
atgaatatagaagatgaacagatagtaatgcctggtgataaattaggaattattgaacaa
taccttcctggagaaggtacctatgacgacaatggtgaaattaaatcatcagtgcttgga
aatgttaaaattaatcaaaaaatgaaggttatttctgttgtgtcagatgcaaagcctgct
cttttaaaagttggagatatagtatacggtcagattaccgacatcaagccacaaagagca
aacgtgaatattgaatgtataaaagacaacgcaaggccattggcattgccttacatgggt
gccatacacatctcacaagccaaaaaagattacttggaaaaattatcagatgcttttaga
ataggagacattattcaagcaaaagttatcaagattactggagataatgtcgatttaggt
actgtagatgatgattgcggagtcctaaaagccatgtgcacccgctgcagagactttatg
catactacacaaaaagtaaatgaacttcaatgtaatacatgtaacaagaaagaaaaacgt
aaagtatcaaacaactacgttaatgattaa
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