KEGG   Methanobrevibacter sp. YE315: TL18_00630
Entry
TL18_00630        CDS       T04279                                 
Name
(GenBank) RNA-binding protein
  KO
K07573  exosome complex component CSL4
Organism
meye  Methanobrevibacter sp. YE315
Pathway
meye03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:meye00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    TL18_00630
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:meye03019]
    TL18_00630
Messenger RNA biogenesis [BR:meye03019]
 Eukaryotic type
  mRNA degradation factors
   3'-5' decay
    Core exosome factors
     TL18_00630
 Prokaryotic type
  Archeal mRNA degradation factors
   Exosome components
    Core exosome
     TL18_00630
SSDB
Motif
Pfam: ECR1_N EXOSC1 RRP4_S1 S1 CsrA RRP40_S1 ECR1_N_2 Zn_ribbon_FGT1_1 DUF5816
Other DBs
NCBI-ProteinID: AMD16671
UniProt: A0A125RAD1
LinkDB
Position
complement(140719..141288)
AA seq 189 aa
MNIEDEQIVMPGDKLGIIEQYLPGEGTYDDNGEIKSSVLGNVKINQKMKVISVVSDAKPA
LLKVGDIVYGQITDIKPQRANVNIECIKDNARPLALPYMGAIHISQAKKDYLEKLSDAFR
IGDIIQAKVIKITGDNVDLGTVDDDCGVLKAMCTRCRDFMHTTQKVNELQCNTCNKKEKR
KVSNNYVND
NT seq 570 nt   +upstreamnt  +downstreamnt
atgaatatagaagatgaacagatagtaatgcctggtgataaattaggaattattgaacaa
taccttcctggagaaggtacctatgacgacaatggtgaaattaaatcatcagtgcttgga
aatgttaaaattaatcaaaaaatgaaggttatttctgttgtgtcagatgcaaagcctgct
cttttaaaagttggagatatagtatacggtcagattaccgacatcaagccacaaagagca
aacgtgaatattgaatgtataaaagacaacgcaaggccattggcattgccttacatgggt
gccatacacatctcacaagccaaaaaagattacttggaaaaattatcagatgcttttaga
ataggagacattattcaagcaaaagttatcaagattactggagataatgtcgatttaggt
actgtagatgatgattgcggagtcctaaaagccatgtgcacccgctgcagagactttatg
catactacacaaaaagtaaatgaacttcaatgtaatacatgtaacaagaaagaaaaacgt
aaagtatcaaacaactacgttaatgattaa

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