Methanobrevibacter sp. YE315: TL18_01295
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Entry
TL18_01295 CDS
T04279
Name
(GenBank) tRNA-splicing ligase
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
meye
Methanobrevibacter sp. YE315
Brite
KEGG Orthology (KO) [BR:
meye00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
meye03016
]
TL18_01295
Enzymes [BR:
meye01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
TL18_01295
Transfer RNA biogenesis [BR:
meye03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
TL18_01295
Prokaryotic type
tRNA splicing ligases
TL18_01295
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
AMD16794
LinkDB
All DBs
Position
277487..278935
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AA seq
482 aa
AA seq
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MSIKDEIKKVRDNVYEIPGSFNKKMRASGRLYIADEYIDELEDGAVEQIVNVACLPGVQR
YSIGLPDIHFGYGFPIGGVAAFALRNGIVSPGGVGFDINCGVRLIKSNLTLEDIEGKLDE
LTEKLFKNIPSGVGSKGKIKLKENEINDVLDYGAEWAVENGYGWSEDLEVLEENGRMVDA
DSSIVSDKAKKRGIPQLGSLGSGNHFLEVQIVDEIYNEEVAEVFGLEKGMIVIMIHSGSR
GCGHQICSDYLRVMDKAYKKYKINIDDRQLACAPLDSKEAQNYIQAMAAAANYAWANRQM
MTHWVRETFEEVLGKSAKDMEMNIVYDVAHNIAKMETHKIFNREEEVLVHRKGATRAFGP
GREEVPEKYRAVGQPVLIPGTMGTASYVLHGTDVAMEETFGSTAHGAGRVLSRSKAKKQY
DADKITDELASKGIKIKATSKHVIEEEAPGAYKDVDSVVRVSDSTGIAKLVAKVKPLSVC
KG
NT seq
1449 nt
NT seq
+upstream
nt +downstream
nt
atgagtattaaagatgaaattaaaaaagttagagataatgtttatgagattccaggatct
ttcaataagaaaatgagagcttctggaaggctttatatagctgatgaatatattgatgaa
ttggaagatggggctgttgagcaaattgtcaatgtggcttgtcttccgggcgttcaaaga
tactcaatcggacttcccgacattcactttgggtacggattcccaataggtggtgttgct
gcattcgcactaagaaacggtatcgtatcaccggggggagtcggatttgatattaactgt
ggagtcagattgattaaatctaatttgacacttgaagatattgaaggcaaattggatgag
cttacagaaaaactgtttaaaaatatcccttcaggtgttggaagcaaaggtaaaataaag
cttaaagaaaatgaaatcaacgatgtgcttgattatggtgctgaatgggctgttgaaaac
ggttacggttggagtgaagatctggaagttttagaagaaaacggaagaatggttgacgct
gactcaagcatagtatctgataaagctaaaaaaagaggaattcctcaattaggctcactt
ggttccggaaatcactttttggaagttcaaattgttgatgaaatttacaatgaagaagtg
gcggaagtatttgggcttgaaaagggaatgattgttattatgattcattcaggctctaga
ggatgcggtcaccagatatgctctgattatttgagggtgatggataaggcttataaaaaa
tacaaaattaacattgatgacaggcagttagcatgtgctccacttgattctaaagaagct
caaaattatatacaggcgatggcggcagctgctaattatgcatgggcaaacagacaaatg
atgacccattgggttcgtgaaacctttgaggaagttttaggaaaatccgcaaaggacatg
gaaatgaatattgtttatgatgtggcccataatattgcaaaaatggaaactcataaaatc
tttaatcgcgaagaggaagttttagttcacagaaaaggtgcaacacgcgcattcggacct
ggaagggaagaagtacctgaaaaatacagggccgtaggacagcctgtcctgattccagga
acaatgggaacagcttcatacgtattgcatggaacagatgttgcaatggaagagaccttc
ggttcaaccgctcacggtgcaggaagggtattgtcaagatctaaagccaaaaagcaatat
gatgcagacaagattacagacgaattggcatcaaaaggcattaaaatcaaagccacaagc
aaacatgtcattgaagaggaagctcctggcgcttataaggatgttgacagtgtagtcaga
gtatccgattcaacaggcatcgcaaaactagttgctaaagtcaaaccattatctgtttgt
aaaggatga
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