Methanobrevibacter sp. YE315: TL18_01410
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Entry
TL18_01410 CDS
T04279
Name
(GenBank) CdcH
KO
K13525
transitional endoplasmic reticulum ATPase
Organism
meye
Methanobrevibacter sp. YE315
Pathway
meye04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
meye00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
TL18_01410
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
meye03019
]
TL18_01410
03009 Ribosome biogenesis [BR:
meye03009
]
TL18_01410
04131 Membrane trafficking [BR:
meye04131
]
TL18_01410
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
meye04147
]
TL18_01410
Messenger RNA biogenesis [BR:
meye03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Ran-mediated transport factors
TL18_01410
Ribosome biogenesis [BR:
meye03009
]
Eukaryotic type
Pre-60S particles
Ribosome quality control proteins
TL18_01410
Membrane trafficking [BR:
meye04131
]
SNARE
SNARE associated proteins
Others
TL18_01410
Autophagy
Aggrephagy
Other aggrephagy associated proteins
TL18_01410
Exosome [BR:
meye04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
TL18_01410
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA
AAA_lid_3
CDC48_N
AAA_16
RuvB_N
AAA_2
AAA_14
AAA_22
AAA_lid_PRS2_C
TIP49
AAA_33
CDC48_2
AAA_5
NPHP3_N
nSTAND3
AAA_3
RNA_helicase
AAA_28
ATPase
Sigma54_activat
Mg_chelatase
AAA_17
AAA_7
AAA_24
Zeta_toxin
SLFN-g3_helicase
IstB_IS21
NB-ARC
DUF815
PhoH
Viral_helicase1
Parvo_NS1
AAA_11
Motif
Other DBs
NCBI-ProteinID:
AMD16815
LinkDB
All DBs
Position
complement(342235..344433)
Genome browser
AA seq
732 aa
AA seq
DB search
MAKNEITLKVAEAISQKDVGQGVARLDPNVMDDLNIKERDLIEIVGEKRTAAIALPSQTD
IGLGVIRIDGLVRKNSGATIGGEVTVKKTKATEAKKVVLAPIENNIRVQGDVRGLFAGKV
MVQGDIIGSQIRAPKPSMNMSFGSLFDELMDFTPTMKEIKFAVISTNPKDIVIVGPNTEV
QLHESPVDVSKIEGVGNLVDVSYEDIGGLKDEVKKVREMIEIPLKRPELFEKLGIAPPKG
VLMHGPPGTGKTLLAKAVASESDAHFIAINGPEIMSKYVGGSEENLREYFEEAEENSPSI
IFIDELDAIAPKREETNGEVERRTVAQLLTLMDGLKSRGQVVVIGATNRPDSLDPALRRP
GRFDREIEIGVPDSEERKEVLEIHTRNMPLAEDVDLDKIANTTHGFVGADLESLCKEAAM
RVVRRILPEIQNDEEIPEEVMKKIVVTGDDFKSAQKEIQPSALREVLVQIPDIKWDDVGG
LDDVKQELKEAVEWPLKHPDTFQRLGIRPPKGTLLYGIPGTGKTLLAKAVASESEANFIS
VKGPELLSKWVGESEKGVREVFRKAKQAAPTVIFFDEIDAIASARSGNDADSGVTKRVVN
QLLTEMDGLEELEDVAIIAATNRPDILDAGLMRPGRFDRHIQVKEPDEEARISIFKVHTK
NMPLAKDVDLKKLAKHTDGYVGADIEAVCREAAMLTLRENLEANEIPYKYFKEAIDKVKP
GNNQEEQLVQYM
NT seq
2199 nt
NT seq
+upstream
nt +downstream
nt
atggcaaaaaatgaaattactctaaaagttgcagaagcaatttcccaaaaagatgttggt
caaggagtcgcaagacttgatccaaacgtaatggatgacttgaacatcaaagaaagggac
ttaatagaaatcgtaggagaaaaaagaactgcagctatcgctcttccttcccaaaccgat
attggacttggagttatcagaattgacggattagtacgtaaaaactcaggagcaactatc
ggtggagaagtcacagttaaaaaaactaaagcaacagaagctaaaaaagttgttttagct
ccaattgaaaataacatccgtgtacaaggagatgtacgtggtttatttgcaggcaaagta
atggtgcaaggagatatcattggatcacaaattagagccccaaaaccaagtatgaacatg
agtttcggcagcctgtttgatgaattaatggacttcacacctacaatgaaagaaatcaaa
ttcgcagtaatatcaaccaacccaaaagacattgtaatcgttggtccaaatactgaagta
caactccatgaaagcccggttgatgtaagcaaaatcgaaggagtaggaaatcttgtagat
gtaagctacgaagatatcggcggtcttaaagatgaagttaaaaaagtaagggaaatgatt
gaaattcctcttaaaagaccggaactctttgaaaaattaggtattgcacctccaaaagga
gtattgatgcacggcccaccaggtaccggaaaaacattacttgcaaaagcagtagctagc
gaaagtgatgctcacttcattgcaataaacggacctgaaatcatgagcaaatatgtgggc
ggatctgaagaaaacctaagagaatatttcgaagaagcagaagaaaattctccttcaatc
atatttatcgatgaactcgatgcaattgcaccaaaaagagaagaaaccaatggagaagtt
gaaagaagaaccgttgctcaacttctaacattgatggatggtcttaaatcccgtggccaa
gtagtagtgattggtgcaactaacagaccagattctctcgacccagcactcaggagacct
ggaagattcgaccgtgaaatagaaatcggagtacctgattctgaagaaagaaaagaggta
cttgaaatccacacaagaaacatgcctcttgcagaagacgtagatttggacaaaattgca
aatacaactcatggatttgtaggagcagatctcgaatcattatgtaaagaagctgcaatg
agagttgttagaagaatcttgccggaaatccaaaacgatgaagagattcctgaagaagta
atgaaaaaaatagtggttactggtgacgatttcaaatcagcacaaaaagaaattcaacct
tccgctttaagagaagttctcgtgcaaatcccagatatcaaatgggatgatgtaggtggc
cttgacgatgtcaaacaggaacttaaagaagctgttgaatggccattaaaacaccctgat
accttccaacgcttaggaataaggcctccaaaaggaaccttgctttatggaattccagga
accggaaaaacattattagcaaaagcagtagctagcgaaagtgaagcaaacttcatctca
gtaaaaggacctgaacttctatcaaaatgggtcggggaatctgaaaaaggcgtcagagaa
gtatttagaaaagcgaaacaagcagcaccaacagtgatctttttcgacgaaattgatgca
atagccagtgcacgtagcggaaatgacgctgacagcggtgtaactaaaagagttgtaaac
caactattaaccgaaatggacggtttagaagaacttgaagacgtagcaatcattgctgcc
accaacagaccagacattttagatgctggacttatgagacctggaagatttgacagacac
atccaagttaaagaacctgatgaagaagcaagaatttcaatctttaaagtccacactaaa
aatatgccgttagcaaaagatgttgacctcaaaaaattggcaaaacacaccgatggatat
gttggtgctgacattgaagcagtttgcagagaagcagcaatgttgactttaagagaaaac
ctcgaagctaatgaaattccatataaatactttaaagaagcaatcgataaagtgaaacct
ggaaataaccaggaagaacagttagttcaatacatgtag
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