KEGG   Methanobrevibacter sp. YE315: TL18_01410
Entry
TL18_01410        CDS       T04279                                 
Name
(GenBank) CdcH
  KO
K13525  transitional endoplasmic reticulum ATPase
Organism
meye  Methanobrevibacter sp. YE315
Pathway
meye04141  Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:meye00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   04141 Protein processing in endoplasmic reticulum
    TL18_01410
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:meye03019]
    TL18_01410
   03009 Ribosome biogenesis [BR:meye03009]
    TL18_01410
   04131 Membrane trafficking [BR:meye04131]
    TL18_01410
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:meye04147]
    TL18_01410
Messenger RNA biogenesis [BR:meye03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    Ran-mediated transport factors
     TL18_01410
Ribosome biogenesis [BR:meye03009]
 Eukaryotic type
  Pre-60S particles
   Ribosome quality control proteins
    TL18_01410
Membrane trafficking [BR:meye04131]
 SNARE
  SNARE associated proteins
   Others
    TL18_01410
 Autophagy
  Aggrephagy
   Other aggrephagy associated proteins
    TL18_01410
Exosome [BR:meye04147]
 Exosomal proteins
  Exosomal proteins of haemopoietic cells  (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
   TL18_01410
SSDB
Motif
Pfam: AAA AAA_lid_3 CDC48_N AAA_16 RuvB_N AAA_2 AAA_14 AAA_22 AAA_lid_PRS2_C TIP49 AAA_33 CDC48_2 AAA_5 NPHP3_N nSTAND3 AAA_3 RNA_helicase AAA_28 ATPase Sigma54_activat Mg_chelatase AAA_17 AAA_7 AAA_24 Zeta_toxin SLFN-g3_helicase IstB_IS21 NB-ARC DUF815 PhoH Viral_helicase1 Parvo_NS1 AAA_11
Other DBs
NCBI-ProteinID: AMD16815
LinkDB
Position
complement(342235..344433)
AA seq 732 aa
MAKNEITLKVAEAISQKDVGQGVARLDPNVMDDLNIKERDLIEIVGEKRTAAIALPSQTD
IGLGVIRIDGLVRKNSGATIGGEVTVKKTKATEAKKVVLAPIENNIRVQGDVRGLFAGKV
MVQGDIIGSQIRAPKPSMNMSFGSLFDELMDFTPTMKEIKFAVISTNPKDIVIVGPNTEV
QLHESPVDVSKIEGVGNLVDVSYEDIGGLKDEVKKVREMIEIPLKRPELFEKLGIAPPKG
VLMHGPPGTGKTLLAKAVASESDAHFIAINGPEIMSKYVGGSEENLREYFEEAEENSPSI
IFIDELDAIAPKREETNGEVERRTVAQLLTLMDGLKSRGQVVVIGATNRPDSLDPALRRP
GRFDREIEIGVPDSEERKEVLEIHTRNMPLAEDVDLDKIANTTHGFVGADLESLCKEAAM
RVVRRILPEIQNDEEIPEEVMKKIVVTGDDFKSAQKEIQPSALREVLVQIPDIKWDDVGG
LDDVKQELKEAVEWPLKHPDTFQRLGIRPPKGTLLYGIPGTGKTLLAKAVASESEANFIS
VKGPELLSKWVGESEKGVREVFRKAKQAAPTVIFFDEIDAIASARSGNDADSGVTKRVVN
QLLTEMDGLEELEDVAIIAATNRPDILDAGLMRPGRFDRHIQVKEPDEEARISIFKVHTK
NMPLAKDVDLKKLAKHTDGYVGADIEAVCREAAMLTLRENLEANEIPYKYFKEAIDKVKP
GNNQEEQLVQYM
NT seq 2199 nt   +upstreamnt  +downstreamnt
atggcaaaaaatgaaattactctaaaagttgcagaagcaatttcccaaaaagatgttggt
caaggagtcgcaagacttgatccaaacgtaatggatgacttgaacatcaaagaaagggac
ttaatagaaatcgtaggagaaaaaagaactgcagctatcgctcttccttcccaaaccgat
attggacttggagttatcagaattgacggattagtacgtaaaaactcaggagcaactatc
ggtggagaagtcacagttaaaaaaactaaagcaacagaagctaaaaaagttgttttagct
ccaattgaaaataacatccgtgtacaaggagatgtacgtggtttatttgcaggcaaagta
atggtgcaaggagatatcattggatcacaaattagagccccaaaaccaagtatgaacatg
agtttcggcagcctgtttgatgaattaatggacttcacacctacaatgaaagaaatcaaa
ttcgcagtaatatcaaccaacccaaaagacattgtaatcgttggtccaaatactgaagta
caactccatgaaagcccggttgatgtaagcaaaatcgaaggagtaggaaatcttgtagat
gtaagctacgaagatatcggcggtcttaaagatgaagttaaaaaagtaagggaaatgatt
gaaattcctcttaaaagaccggaactctttgaaaaattaggtattgcacctccaaaagga
gtattgatgcacggcccaccaggtaccggaaaaacattacttgcaaaagcagtagctagc
gaaagtgatgctcacttcattgcaataaacggacctgaaatcatgagcaaatatgtgggc
ggatctgaagaaaacctaagagaatatttcgaagaagcagaagaaaattctccttcaatc
atatttatcgatgaactcgatgcaattgcaccaaaaagagaagaaaccaatggagaagtt
gaaagaagaaccgttgctcaacttctaacattgatggatggtcttaaatcccgtggccaa
gtagtagtgattggtgcaactaacagaccagattctctcgacccagcactcaggagacct
ggaagattcgaccgtgaaatagaaatcggagtacctgattctgaagaaagaaaagaggta
cttgaaatccacacaagaaacatgcctcttgcagaagacgtagatttggacaaaattgca
aatacaactcatggatttgtaggagcagatctcgaatcattatgtaaagaagctgcaatg
agagttgttagaagaatcttgccggaaatccaaaacgatgaagagattcctgaagaagta
atgaaaaaaatagtggttactggtgacgatttcaaatcagcacaaaaagaaattcaacct
tccgctttaagagaagttctcgtgcaaatcccagatatcaaatgggatgatgtaggtggc
cttgacgatgtcaaacaggaacttaaagaagctgttgaatggccattaaaacaccctgat
accttccaacgcttaggaataaggcctccaaaaggaaccttgctttatggaattccagga
accggaaaaacattattagcaaaagcagtagctagcgaaagtgaagcaaacttcatctca
gtaaaaggacctgaacttctatcaaaatgggtcggggaatctgaaaaaggcgtcagagaa
gtatttagaaaagcgaaacaagcagcaccaacagtgatctttttcgacgaaattgatgca
atagccagtgcacgtagcggaaatgacgctgacagcggtgtaactaaaagagttgtaaac
caactattaaccgaaatggacggtttagaagaacttgaagacgtagcaatcattgctgcc
accaacagaccagacattttagatgctggacttatgagacctggaagatttgacagacac
atccaagttaaagaacctgatgaagaagcaagaatttcaatctttaaagtccacactaaa
aatatgccgttagcaaaagatgttgacctcaaaaaattggcaaaacacaccgatggatat
gttggtgctgacattgaagcagtttgcagagaagcagcaatgttgactttaagagaaaac
ctcgaagctaatgaaattccatataaatactttaaagaagcaatcgataaagtgaaacct
ggaaataaccaggaagaacagttagttcaatacatgtag

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