Methanobrevibacter sp. YE315: TL18_03835
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Entry
TL18_03835 CDS
T04279
Name
(GenBank) excinuclease ABC subunit B
KO
K03702
excinuclease ABC subunit B
Organism
meye
Methanobrevibacter sp. YE315
Pathway
meye03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
meye00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
TL18_03835
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
meye03400
]
TL18_03835
DNA repair and recombination proteins [BR:
meye03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
TL18_03835
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
TL18_03835
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrB_inter
Helicase_C
UvrB
ResIII
UVR
DEAD
SWI2_SNF2
Kinesin
AAA_30
AAA_22
Microtub_bd
DUF87
Motif
Other DBs
NCBI-ProteinID:
AMD17228
UniProt:
A0A125RBY8
LinkDB
All DBs
Position
882813..884777
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AA seq
654 aa
AA seq
DB search
MKEFKLKSPYKPLGDQPKAINSLAEGIKNGIKEQTLLGVTGSGKTFTMANVIEKVQKPTL
VISHNKTLAAQLYEEFKEFFPDNAVEYFVSYYDYYQPEAYVPRTDTFIDKEASINDDIDI
MRHSATQSLLSRDDVIVVSSVSCIYGIGSPEDYGEFAFGISVGDVYDRFEILARLVFMQY
ERNDIEFARGQFRVRGDVIEINPVHGTPPIRIELFGDEIDAISIIDNVTGRKKESLQRYM
IFPAKHFVVGQDKMDTAISKISQELDERLEELNSMGKLLEAQRLEQRTRFDIEMLREMGY
CPGVENYSMHLSGREWGEKPYSLLKYFPDDFLTIIDESHVTVPQIRGMYNGDRARKETLV
EHGFRLPSAKENRPLRFDEFESSVNQVIYVSATPAQYELSKSRNVVEQIIRPTGLVDPEV
LIRPVTGQVEDLLKEVRLTAEKDERVLVTTLTKRMAEDLTDYYARIGVKVRYMHSEIDTL
ERIDIVNDLRRGKFDVLVGVNLLREGLDLPEVSLVAILDADKEGFLRNETSLIQTIGRAA
RNVNGRVIMYVDDMTDSVRNAYDITMKRRKLQMKYNEVHGITPKSTQRTLKEKLAEEDEK
YKVRGADIEKMPKDELRLLIRDLEKDMKDAASRLDFERAADLRNKLYALKGFDK
NT seq
1965 nt
NT seq
+upstream
nt +downstream
nt
atgaaggaattcaagttaaaatcaccttataaaccactgggtgatcaaccaaaagccatt
aactcattagctgaaggcataaagaatggaataaaagaacaaactcttttgggagtaaca
ggttcaggtaagactttcacgatggcaaatgtcattgaaaaagtccagaagcctactctt
gtcatttctcacaacaagactttggctgcacagctttatgaggaattcaaggaatttttc
cctgataatgcagttgaatattttgtaagctattatgattattaccagcctgaggcttat
gtgccaagaactgatactttcattgacaaggaagcgtccatcaatgatgatattgatata
atgaggcattctgcaacccaatcactattatcaagggatgatgttattgttgtaagcagt
gtaagctgcatctatggtatcggttcacctgaagattatggtgaatttgcctttgggatt
tcagttggagatgtctatgacagatttgaaattctcgcccgtctggtattcatgcaatat
gaacgaaatgatattgaatttgctcgtggtcaatttagggttcgtggggatgtaattgaa
attaatccggttcatggaacacctccaattagaatcgaactgttcggtgatgagattgat
gccattagtatcattgacaatgttaccggaagaaaaaaggaatcgcttcaaagatacatg
attttccctgcaaagcactttgtcgttggccaggacaagatggatacggctatttctaaa
atttctcaagagctagatgaaaggcttgaagagttaaattcaatgggtaagctattggaa
gctcaaagattggagcaaagaacccgttttgatatagaaatgcttcgtgaaatgggatat
tgtccaggtgtagaaaactattccatgcatctatccggacgtgaatggggtgaaaagcca
tattcgcttttaaagtatttcccggatgatttcttgacaataattgacgagtctcacgta
accgttcctcaaatcaggggaatgtataatggtgaccgtgcacgtaaggaaactttggtt
gagcatggattcaggcttccttctgctaaggaaaataggcctttaaggtttgatgagttc
gagtcatctgtcaatcaggtaatatatgtatcagcaacaccggctcaatatgagctttca
aagtcaagaaatgttgttgaacagattattaggccgaccggtctggtggatcctgaagta
ttgataaggcctgtaacaggccaggttgaagacctgcttaaagaggttagacttactgcc
gaaaaggatgagagggttttggttaccacattaactaaaagaatggctgaagatttgaca
gactattatgcgagaataggtgttaaagtaagatatatgcattcagaaattgatacattg
gaacgtattgacattgtcaatgacttaagaagaggcaaatttgatgttttggtaggtgta
aatcttttaagggaaggtctggacctgccggaggtttctctggtagctattcttgatgcc
gataaggaaggatttttaagaaacgaaacttcattgatacagaccattggccgtgcggca
agaaacgtcaacggtcgtgtaatcatgtatgttgatgatatgactgattctgttagaaat
gcatatgacattacaatgaaaaggcgcaagctgcagatgaaatacaatgaggttcatgga
attactccaaaatctacccaaaggacattgaaagaaaaactcgctgaggaagatgaaaaa
tacaaagtgcgcggtgcagacatcgaaaaaatgcctaaggatgagcttcgcctgctgata
agggatttggaaaaggacatgaaggatgcagcttcaaggcttgactttgaaagggctgcc
gatttaagaaataagctttatgccttgaaaggttttgataaatag
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