Methanobrevibacter sp. YE315: TL18_04620
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Entry
TL18_04620 CDS
T04279
Name
(GenBank) hypothetical protein
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
meye
Methanobrevibacter sp. YE315
Pathway
meye03420
Nucleotide excision repair
meye03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
meye00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
TL18_04620
03430 Mismatch repair
TL18_04620
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
meye03400
]
TL18_04620
Enzymes [BR:
meye01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
TL18_04620
DNA repair and recombination proteins [BR:
meye03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
TL18_04620
MMR (mismatch excision repair)
Other MMR factors
TL18_04620
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
PDDEXK_1
Viral_helicase1
UvrD_C_2
AAA_30
AAA_12
DEAD
Cas_Cas4
ResIII
DUF1149
AAA_11
NPHP3_N
Dna2
Pro-NT_NN
Motif
Other DBs
NCBI-ProteinID:
AMD17365
LinkDB
All DBs
Position
1089906..1092914
Genome browser
AA seq
1002 aa
AA seq
DB search
MEFNKNQEDVINFGKGTLLVEAGPGSGKTTVIVSRIIHLIESGVNPEEFLVITFTRKAAE
NLKNKLKTSLSDETISKMQISTIHSFCLEYLKTKNQFLNLIDDDSSEKKALFIQKFKDKL
GFTKEYTLLDYQISSVINKFGEYTCFNVNSKELTDYIKDTRPISQNYIDFISSLNHFSKK
RVEDEDLKDDWYNARYLQIAKSYPIYLKLLDEFDYVDYDTLQLKTLKELKKDPETPYNCI
LIDEFQDTDPLQFKIFEILRKNSDYFTAVGDVDQHIYAFRSSYSDYFKELCENAPHELIS
LNTNYRSTEDIVELTEEFIEEYRKDYSQKHMVSYNLGYTNPSLFIKVESPQDEANQIFNT
IQYLKHNKDVNYEDIAVLYRKHYNKTIPELIRLLDENSINFTIRGQADLKDQVEVKSVIL
LLWYITRRTDNLYVSSQDELKELNLKGFCTDDEEDTIWSLADETKQYLTELQDSYHDELL
RIENQIRQKEGRNKVRAVHNIRKNEDQDTLYEIFNQVEKPVVDLSKISNDKDREFFQKLE
DLRDKIHLEESLTCLDVYYELLSLSDYFTDIDENTTKVNNLAALTQTIYNYEEIISQTDV
KGLFYFLNRMIGDYSSYYSNEGGVQLMTIHASKGLEFPVTIVATLQKDKFPMKIKDPNRE
KNYINGKETFYTPTRFLKYKDIPIDDEVELSIEEYDNRLIEEENRLDEAEEAHILYVAMT
RAADLLILSCCGELPDEINKIKESLKPLNEDALSEVIIKKHAPVQEDEKLKLNYSSYSTY
NLCPFMYNLIYNLGFRVSSENVTNLGTVFHEIMEKVNLKLKENHEVSDEELNKITEEVFT
SLFDLEENEDKFDEIRKSVQDYYNTYSINREVLETELPFEIERDNYILNGAIDLIYKISD
TEIGILDYKNAEHDVNKIAHYEKQLYIYASALKELADFKDYEINEAITHFVKTDYQNKVE
VTDEKINTQLDKLNDVALKINSEEFPKKESNFCKYCKFSIIC
NT seq
3009 nt
NT seq
+upstream
nt +downstream
nt
atggaattcaacaaaaatcaggaagatgtaatcaattttggaaaaggaactcttttagta
gaagccggcccaggctcaggcaaaactacagtcattgtaagcagaatcattcatctaatc
gaaagcggcgtcaacccagaggaatttctagtaatcacatttacaagaaaagccgccgaa
aacctaaaaaacaaactcaaaacctctctttcagacgaaaccatttcaaaaatgcaaatc
tccactatccattcattctgcctggaatacctcaagaccaaaaaccaatttttaaatcta
attgacgatgactcctcagaaaagaaggcattgttcattcaaaaattcaaagacaaatta
ggatttacaaaggaatacactctactagattaccaaatctcttcagtaattaacaaattt
ggggagtacacatgttttaatgtcaactcaaaagagctaacagattacattaaagacaca
agaccaatttcacaaaactacatagatttcatcagctccttaaatcacttttccaaaaag
agagtcgaagatgaagatttaaaggatgactggtataatgcaagatacctgcagattgca
aaatcatacccaatttacctcaagcttctggatgaatttgactatgtcgactatgacaca
ttacagcttaaaactctaaaagaactcaaaaaggatccggaaactccatacaactgcatt
ctaattgacgagtttcaggacactgatccattgcaatttaaaatcttcgaaatattaaga
aaaaactcagactatttcactgcagtcggtgacgttgaccagcacatctacgcctttaga
agctcctacagcgattattttaaggaattatgtgaaaatgcacctcatgaactaatcagt
cttaacaccaattaccgttcaactgaagatatagtcgaattgactgaagagttcattgaa
gagtacagaaaggactattcccagaagcacatggtcagctacaatctaggatataccaat
ccttcattattcataaaagtcgaatcaccgcaagatgaggcaaatcagattttcaacaca
atccagtacctaaaacataacaaagatgtaaattatgaagacattgcagtactttacaga
aagcattacaacaaaacaattccggaattaatcagactgctggatgaaaacagcatcaat
ttcaccatacgcggccaggcagacttgaaagatcaggttgaagtcaaatctgtcattctt
ttgctgtggtatattactagaagaacagataacttgtatgtttcttcacaggatgaatta
aaagagctgaaccttaaaggattctgcacagatgatgaggaggatacaatctggtcactt
gcagatgaaactaaacagtacctgactgagcttcaggattcataccatgatgagctttta
agaattgaaaatcaaatccgccaaaaagaaggaagaaacaaagttagagcagttcacaac
atcagaaaaaacgaagaccaggatacattatatgaaatcttcaatcaagttgaaaagcca
gtagtggatttatccaaaatcagcaatgataaagacagagaatttttccaaaaattagaa
gacttaagagataaaatacatttggaagaatcactgacatgtcttgatgtatattatgaa
ttgttatccttaagtgattatttcaccgatattgatgaaaacacaacaaaagtcaataac
ctagcagcattgacccagacaatatacaactatgaagaaatcatatcacaaacggatgtt
aaagggttattttactttttaaataggatgattggtgattacagttcatattattccaat
gagggcggagtgcagctgatgacaatccatgcatcaaagggtcttgaatttccggtaact
atcgttgcaacactccagaaggataagtttccaatgaaaatcaaagatccgaaccgtgaa
aagaattacattaacggtaaagaaacattctacactcctacaagatttttaaaatataaa
gacattccaatcgatgatgaagtcgaactatctattgaagaatatgacaatcgcctgatt
gaagaggaaaacaggctggatgaagctgaagaggcacatattctttatgttgcaatgaca
cgtgcagccgatttactgatattgtcatgctgcggagaacttcctgatgaaataaataaa
atcaaagaatccttaaaaccattaaatgaagatgcattgtctgaagttataataaaaaaa
cacgctccagttcaggaggatgaaaaacttaaactgaactattcaagctattcaacctat
aacctatgcccattcatgtataacctgatttacaacctcggatttagggtttcaagcgaa
aatgtaacaaatttaggaacggttttccacgaaataatggaaaaggtcaatctgaaactg
aaggaaaatcacgaagtctcagatgaggagctgaataagattaccgaagaggttttcaca
tcactgtttgatttagaggaaaatgaagacaaatttgatgagattagaaaatcagttcag
gattattacaatacatattcaataaacagggaagtcctggaaacggagcttccatttgaa
atagagcgagataactatattctaaatggagcaatcgacttgatttataagatttccgac
acggaaatcggaatcctggactataaaaacgcagaacatgacgttaataaaattgctcac
tatgaaaagcagttgtatatttatgcatcagctttaaaggaacttgctgactttaaggat
tatgaaattaatgaggcaataactcattttgtaaaaacagactatcagaataaggttgaa
gttacagatgaaaaaataaatactcaattagataaattaaatgatgtagctttaaaaatt
aattcagaagaatttcctaaaaaagaaagtaatttctgcaagtattgtaaatttagtata
atttgttaa
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