Methanobrevibacter sp. YE315: TL18_06240
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Entry
TL18_06240 CDS
T04279
Name
(GenBank) RNA-binding protein
KO
K12589
exosome complex component RRP42
Organism
meye
Methanobrevibacter sp. YE315
Pathway
meye03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
meye00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
TL18_06240
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
meye03019
]
TL18_06240
Messenger RNA biogenesis [BR:
meye03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
TL18_06240
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Cofactors
TL18_06240
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
Motif
Other DBs
NCBI-ProteinID:
AMD17654
UniProt:
A0A125RD64
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All DBs
Position
complement(1386365..1387150)
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AA seq
261 aa
AA seq
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MDIVPEITRQSITNLVKNDKREDGRGLTEYRDISIETNVISKAEGSARVRLGGTQVMVGI
KPQLGSPFPDTPDLGVLMTNCEMLPMADPNFEPGPPSDDSIELARVVDRGIRESELVELD
KLCVEEGKHVWMLFIDLHIIDNCGNLFDACELAVMAALKSTKLPVAEIVDEEVVISEDET
FDLPINNELALCTFVKIGDKMVIDPTLDEERVSSARLNVGVTKEGHICSMQKGGKEPFTK
DEILYCVNTAVGKVKELIEYL
NT seq
786 nt
NT seq
+upstream
nt +downstream
nt
atggatatagtaccagaaattacaagacaaagtattactaaccttgtcaaaaacgataaa
agagaagatggcaggggattaactgaatatagggatatttctattgaaactaatgttatt
tctaaagctgaaggttctgctcgcgtaagacttggtggaactcaagttatggtgggtatt
aaaccacaacttggaagcccattcccagatactcctgatttaggagttttaatgaccaat
tgtgaaatgttgccgatggctgatcctaattttgaaccaggaccacctagtgacgattcc
attgaacttgcacgtgtggttgacagaggtatccgtgaaagtgaattggtggaattagac
aaattatgtgttgaagaaggaaaacacgtttggatgttattcattgatttgcacattatc
gacaactgcggaaaccttttcgatgcatgtgaattagctgttatggctgcactcaaatca
acaaaattgcctgttgctgaaattgttgatgaagaagtagtcattagtgaagatgaaacc
tttgatttaccaatcaacaacgaattagcattatgtaccttcgttaaaattggtgataaa
atggttattgacccaacattggatgaggaaagagtatccagtgctcgtttaaatgttggt
gttacaaaagaaggtcacatctgttccatgcaaaaaggtggaaaagaaccatttactaaa
gatgaaattctctactgtgtaaatactgcagtaggtaaagtaaaagagttaatagaatat
ctttaa
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