Methanobrevibacter sp. YE315: TL18_06930
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Entry
TL18_06930 CDS
T04279
Name
(GenBank) single-stranded DNA-binding protein
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
meye
Methanobrevibacter sp. YE315
Pathway
meye03410
Base excision repair
meye03430
Mismatch repair
meye03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
meye00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
TL18_06930
03430 Mismatch repair
TL18_06930
03440 Homologous recombination
TL18_06930
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
meye03400
]
TL18_06930
DNA repair and recombination proteins [BR:
meye03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
TL18_06930
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
TL18_06930
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
TL18_06930
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DHHA1
DHH_CID
DHH
Motif
Other DBs
NCBI-ProteinID:
AMD17773
UniProt:
A0A109UUJ1
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All DBs
Position
1542107..1543513
Genome browser
AA seq
468 aa
AA seq
DB search
MQIPQLMHEQYLQAKEIIENSDDIKIYSHIDCDGICSGAILSTILDRQNKEHDIEFVNLD
VLDDIELDHDLTIFSDLGSGQNITGKAKKGQKIIVLDHHPPLRDLDYKNDKDYTYLEINP
MHHGIDGSYYVCGGGLCYFLAKEFGYTDLSWIGVLSAIGDMQNTKTGHFEGLNKIIQQDA
IDGGYLGVIKSDINIYGRNTRPLFVALSYFSDVRLPITNNTTETMAILEELEIDEKHNRK
TLNELTMEEKARLYQRLVEMISKVVPGRYVRYVPQLIIGDSYTFLKEDEHSFLRDGSEFS
TAMNACGRNHEEKIAMEVLKGDRFESLDELEAVSLDHRRNLAQAIAKVAEGDETNIVEMD
NLQYFDGDGIKPEIVGTITGMILGYCDWKKPIIGFTQTDSDGIKVSLRCSRLLSYDGIHF
GNIIRKIAGEVGGTGGGHAMACGAYIPIDKKSDFLERFNNELEGKITN
NT seq
1407 nt
NT seq
+upstream
nt +downstream
nt
atgcaaataccacaattgatgcacgaacaatacctccaggcaaaagagattatcgaaaac
agtgacgacatcaagatttactcacatatcgactgtgacggtatctgttcaggtgcaata
ctatcaaccatactagacagacagaacaaagagcatgacatagaattcgtgaacctggat
gttctggacgatatcgagcttgaccatgacctgacaatattttccgatttgggttcaggt
caaaacattaccggaaaagccaaaaaaggccagaagataattgtcctagaccaccaccct
ccattaagggatctggattacaagaatgacaaggattatacctacctggaaatcaatccg
atgcaccacggcattgacggatcatattatgtctgcggcggaggattatgctatttcctt
gcaaaggaattcggatatactgacttgagctggattggagttctatccgcaattggagat
atgcagaatacaaaaaccggacatttcgaaggcttgaataaaatcatccagcaggatgca
atcgatggaggatatcttggagtaatcaaaagcgacatcaacatttacggaagaaatacc
cgaccgttatttgttgcgctttcatacttcagcgatgtcagattgcctattacaaacaac
accacagaaaccatggctattttagaagagctggaaattgatgaaaaacacaacaggaaa
accttgaatgaattgacaatggaagaaaaggccagactttaccaacgccttgttgaaatg
atttcaaaagttgttcccggaaggtatgtcagatacgttccccaactaatcatcggcgat
tcatatactttcctaaaagaagatgaacacagctttttaagggacggttcagaattttcg
actgcaatgaatgcgtgcggaagaaaccatgaggaaaagattgcaatggaagtcctgaaa
ggggacagattcgagtcccttgatgaacttgaagctgtaagccttgaccataggcgcaat
ttagcccaagcaattgccaaagtggctgaaggcgatgaaaccaacattgttgagatggac
aatctgcagtacttcgacggtgatggaatcaaacctgaaatcgttggaacaataaccgga
atgattctgggctattgcgactggaaaaaacctatcataggatttacacaaaccgacagc
gacgggattaaggtttcgcttagatgttcaagattgctttcctatgacggaattcatttc
ggaaatataatccgtaaaattgccggagaagttggaggaaccggcggagggcacgcaatg
gcttgcggagcatacataccaattgataaaaaatcagatttccttgaacgttttaacaat
gaattagaaggaaaaataacaaattaa
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