Methanobrevibacter sp. YE315: TL18_07245
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Entry
TL18_07245 CDS
T04279
Name
(GenBank) ribonuclease J
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
meye
Methanobrevibacter sp. YE315
Pathway
meye03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
meye00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
TL18_07245
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
meye03019
]
TL18_07245
Messenger RNA biogenesis [BR:
meye03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
TL18_07245
BRITE hierarchy
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Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RMMBL
Lactamase_B
Lactamase_B_2
Motif
Other DBs
NCBI-ProteinID:
AMD17831
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Position
complement(1617097..1618440)
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AA seq
447 aa
AA seq
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MSVEVIAIGGYQEVGKNMTAVKIGEDVIIFDMGIHLDRISMHEDTDIDRMHSLDLIERGV
IPDDTLMKDVDGKVKGIVFSHGHLDHIGAVAKLAHRYDAPLIGTPYTAALIEKQIKGERK
FKVTNPIRPLNPGNKLKLSKDITLEFVQSTHSIPQAVFPVLHTPEGIIIYALDFKFDNHQ
KVSPPPDYKRLKELGRKGVLALIVETTNAKNYNEVKTHSERIARNILEDVMKGPLQEKNG
MIVTTFSSHVERVQAIADIAKKSHREIFFLGRSMERFCGIAQKLGILKLPKNACIYGSPK
AVNKALIRADEDRANYLLVTTGHQGEPDALLPRIANGRTPFNIKKGDNIIISAPIIPNPT
NAANRHIMERRLKVKGARIYPNAHVSGHAGREDHREFLRMVKPQHIIPAHGDLSMLAAYA
ELAEEEGYRIGYDIHILRNAQAQVFKS
NT seq
1344 nt
NT seq
+upstream
nt +downstream
nt
atgagcgttgaagtaatcgctattggtggataccaggaagttgggaaaaacatgacagcg
gtcaaaattggtgaggacgtcatcatttttgatatgggtattcacttggacaggattagt
atgcatgaagatactgatatcgatagaatgcatagtttagatttaattgaacggggggtt
attccggacgatacattaatgaaggatgttgatggtaaagtaaaaggaatagtcttttca
cacggtcatttagaccatattggtgctgttgctaaattggcacatagatatgacgcacca
ttaattggaacaccatatactgctgcgttaattgaaaagcaaataaaaggagaacgtaaa
ttcaaggtaactaatccgattaggcctttgaatcctggaaacaaattaaagctttcaaaa
gacattacattggaatttgtccaatcaactcacagtattccacaagcagtatttccggta
ttgcatactccggaaggaattattatttatgctttagactttaaatttgataatcatcaa
aaggtgtcacctcctcctgattataaaagattaaaggaattgggcaggaaaggtgtgctt
gctttaattgtagaaacaactaatgctaaaaattacaatgaggtaaagactcattctgag
cgtattgcacgtaatattcttgaagatgtgatgaaaggaccattgcaagagaaaaatggt
atgattgttacaacattttcatctcacgtagaacgtgttcaggctattgcggatattgct
aaaaaaagccatagggaaatatttttccttggaaggtcaatggaaaggttctgcggtatt
gcgcaaaaattaggaattctaaagcttcctaaaaatgcctgcatttatggatctccaaaa
gctgtaaataaggcattaataagggctgatgaagatagggcaaactatttgcttgttact
acaggacaccaaggagagcctgatgcattgcttccaagaattgccaatggaagaactcct
tttaatatcaagaaaggagacaacataattatctccgcaccgattattccaaacccgaca
aatgctgcaaataggcatattatggagagaaggttaaaggttaagggtgcaagaatttat
ccaaatgctcacgtttccggacacgctggaagagaagaccatcgtgaattcttgcgtatg
gtaaagccacagcatattattccagcacacggagatttatcaatgcttgcagcttatgct
gaactggctgaagaagaaggatatagaataggttacgatattcatattttaagaaatgca
caagcacaagtttttaaaagttag
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