Methanocella conradii: Mtc_0225
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Entry
Mtc_0225 CDS
T01774
Name
(GenBank) AAA family ATPase, CDC48 subfamily
KO
K13525
transitional endoplasmic reticulum ATPase
Organism
mez
Methanocella conradii
Pathway
mez04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
mez00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
Mtc_0225
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mez03019
]
Mtc_0225
03009 Ribosome biogenesis [BR:
mez03009
]
Mtc_0225
04131 Membrane trafficking [BR:
mez04131
]
Mtc_0225
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
mez04147
]
Mtc_0225
Messenger RNA biogenesis [BR:
mez03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Ran-mediated transport factors
Mtc_0225
Ribosome biogenesis [BR:
mez03009
]
Eukaryotic type
Pre-60S particles
Ribosome quality control proteins
Mtc_0225
Membrane trafficking [BR:
mez04131
]
SNARE
SNARE associated proteins
Others
Mtc_0225
Autophagy
Aggrephagy
Other aggrephagy associated proteins
Mtc_0225
Exosome [BR:
mez04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
Mtc_0225
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA
AAA_lid_3
CDC48_N
CDC48_2
RuvB_N
AAA_16
AAA_2
TIP49
AAA_5
AAA_14
AAA_22
AAA_33
nSTAND3
AAA_28
Vps4_C
Mg_chelatase
RNA_helicase
AAA_24
NPHP3_N
AAA_17
AAA_7
IstB_IS21
AAA_18
AAA_3
Sigma54_activat
Zeta_toxin
AAA_lid_PRS2_C
Parvo_NS1
ABC_tran
AAA_25
SLFN-g3_helicase
DUF815
PhoH
ATP-synt_ab
NB-ARC
AAA_19
TsaE
AAA_11
ATPase
Viral_helicase1
KAP_NTPase
Motif
Other DBs
NCBI-ProteinID:
AFC98996
UniProt:
H8I8E3
LinkDB
All DBs
Position
221654..223876
Genome browser
AA seq
740 aa
AA seq
DB search
MADRNEVTLRVQEAYHRDVGRGIARIDMETMKKLGMVSGDIIEIEGKGATSYAVVWPGYP
SEEGKGVILIDGNTRANARVGIDDRVKVRKIQAKPAERITLAPTQPIRITGGEYYLLKLL
EGRPTSKGQNIRVEMLGSPMEFVVTSTRPAGPVIADRRTEITISEKPAAEKLERVPRVTY
EDIGGLKREIGLVREMIELPLRHPELFQKLGIDPPKGVLLYGPPGTGKTMIAKAVASETD
ANFISISGPEIMSKYYGESEKQLRDIFKDAEDNAPSIIFIDEIDSIAPRREEVTGEVERR
VVAQLLALMDGLQARGQVIVVAATNRPNAVDPALRRGGRFDREIEIGVPDKNGRLEILHV
HTRGMPLAQDVNLEKIAEVTHGFVGADIASLCKEAAMHALRAIMPEIDIEKEIPQEVLDK
LQIRMADFEDALKNIEPSAMREVFVEVPNVHWDDIGGLEKVKQELRETVEWPLKYKDVFE
VTHTRAPKGILVFGPPGTGKTLLAKAVANESEANFISVKGPEVLSKWVGESEKAVRETFR
KARQSAPTIIFFDEIDAIAPTRGGSFDSHVTERVVSQLLTELDGLEELHSVVVMAATNRP
DMVDTALLRPGRLDRLLYIPPPDERSRAEIFKIHTRGKPLGPDVDFEALAKRTKDYVGAD
IEAVCREASMMAIREYINGSMSPEEAKSKAKDIRITMKHFEAALRKVKPSASRESMKAYE
RLAENFARQVTDIDEENKEV
NT seq
2223 nt
NT seq
+upstream
nt +downstream
nt
atggcagacaggaacgaagtgacgctgcgggtacaggaggcctaccacagggacgtgggc
aggggcatcgcccgcatcgacatggagacgatgaagaagctgggcatggtgagcggcgac
atcatcgagatagagggcaagggcgccacctcgtacgccgtcgtgtggccagggtacccg
agcgaggagggcaagggagtcatactcatagatggcaacacgagagcgaacgccagggtc
ggcatcgacgacagggttaaggtgagaaagatccaggcaaagcccgccgagcggatcacg
ctggcccctactcagcctatacggattactggcggcgagtactacctgttgaagctgctg
gaaggccggcccacctccaagggccagaacataagggtggagatgctgggcagcccgatg
gagttcgtggtgacctcgacgaggcccgcagggccggtcatcgccgacaggcggacggag
atcaccataagcgagaagcctgcagccgagaagctggaaagggtgccgagggtaacatac
gaggatataggcggcctaaaaagggagataggcctggtaagggagatgatcgagctcccg
ctgaggcacccggagctattccagaagctgggcatagacccgcccaagggcgtgctcctg
tacggcccgccgggcacgggcaagaccatgatagccaaggcggtggccagcgagaccgac
gctaacttcatcagcattagcggccccgagataatgtccaagtactacggagagtccgag
aagcagcttcgggacatcttcaaggacgccgaggataacgcgccttcgataatattcata
gatgagatagactcgattgcgccgaggcgtgaggaagtcacgggggaggtggagagaagg
gttgtggcgcagctgctggccctgatggacggactgcaggcccgcggccaggtcatcgtt
gtggcggccacgaacaggccgaacgcggttgaccctgcgctccgccgtggaggcaggttc
gacagggagatagagataggcgtcccagacaagaacggccgcctcgaaatactgcacgtc
catacaagaggaatgccgctagcgcaagacgtcaacctggagaagatagccgaagtcacc
cacggcttcgtgggcgccgacatagcctccctatgcaaggaggcggcgatgcacgccctg
agggctatcatgcccgagatagacatagagaaggagatcccccaggaggtcctggacaag
ctccagataaggatggccgacttcgaggatgcgctgaaaaacatcgagccctctgccatg
agggaagtgttcgtagaggtgccgaacgtccactgggacgacatcggtggcctggagaag
gtgaagcaggagctcagggagaccgtggagtggccgctgaagtacaaggacgtgtttgag
gtcacccacacgagggcgcccaagggcatactcgtgttcggcccgccgggcacgggcaag
acacttcttgcgaaggcggtggccaacgagtccgaggccaactttatcagcgtcaagggc
cccgaggtcctgtcgaagtgggtcggggagtctgagaaggcggtaagggagacgttccgc
aaggcgaggcagagcgcccccactataatcttcttcgacgagatagacgccatcgccccg
acgaggggcgggagcttcgactcgcacgtcaccgagcgggtggtctctcagcttttgact
gagttagatggccttgaggagcttcacagcgtggtggtgatggcggcaacgaaccggcct
gacatggtcgatacggccctgcttaggcccggcaggctcgacaggctcctgtacatcccg
cccccggacgagcgttccagggcggagatcttcaagatccacaccaggggcaagccgctc
ggcccggacgtggacttcgaggcgctggccaagcgtacgaaggactacgtcggggcagat
atagaggcggtgtgccgcgaggcgtccatgatggcaataagggagtacatcaatggctcg
atgtcgccggaggaggctaagagcaaggcgaaagacatccgaataacgatgaagcacttc
gaagcggcccttagaaaggtaaagccgtccgcgtcgagggagagcatgaaggcgtacgag
cgcctggccgagaacttcgccaggcaggtcacggatatagacgaggaaaataaggaggta
tag
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