Methanocella conradii: Mtc_0260
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Entry
Mtc_0260 CDS
T01774
Name
(GenBank) AAA family ATPase, CDC48 subfamily
KO
K13525
transitional endoplasmic reticulum ATPase
Organism
mez
Methanocella conradii
Pathway
mez04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
mez00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
Mtc_0260
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mez03019
]
Mtc_0260
03009 Ribosome biogenesis [BR:
mez03009
]
Mtc_0260
04131 Membrane trafficking [BR:
mez04131
]
Mtc_0260
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
mez04147
]
Mtc_0260
Messenger RNA biogenesis [BR:
mez03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Ran-mediated transport factors
Mtc_0260
Ribosome biogenesis [BR:
mez03009
]
Eukaryotic type
Pre-60S particles
Ribosome quality control proteins
Mtc_0260
Membrane trafficking [BR:
mez04131
]
SNARE
SNARE associated proteins
Others
Mtc_0260
Autophagy
Aggrephagy
Other aggrephagy associated proteins
Mtc_0260
Exosome [BR:
mez04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
Mtc_0260
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA
AAA_lid_3
CDC48_N
AAA_16
RuvB_N
TIP49
AAA_2
AAA_5
CDC48_2
AAA_22
AAA_14
ABC_tran
AAA_28
AAA_33
nSTAND3
IstB_IS21
NACHT
RNA_helicase
AAA_18
AAA_lid_PRS2_C
Sigma54_activat
AAA_24
Mg_chelatase
NPHP3_N
Parvo_NS1
AAA_7
ATPase
ATPase_2
AAA_17
SLFN-g3_helicase
NB-ARC
Zeta_toxin
PhoH
Sigma54_activ_2
TsaE
DUF815
KAP_NTPase
ResIII
Bac_DnaA
ORC-CDC6-like
DUF6276
Motif
Other DBs
NCBI-ProteinID:
AFC99031
UniProt:
H8I928
LinkDB
All DBs
Position
complement(259297..261579)
Genome browser
AA seq
760 aa
AA seq
DB search
MTVQKEEKARVRLKVAEADKREVGRGIARINERHIKEMGVSYGDVIQISGRRSTAAIVGS
AFPSDMHLDIVRIDGIIRHNAGTTLGDYVEVSRAKWSEAKKVVLMPVQKGIRIYASPESL
QASFLNRPVCQGDIVSTSTYTPPSQSFNSNLMFEEFFRDFFSSPSFGLGEVKLAIASTVP
AGVVKITEVTEIQLLPEATEVIKSEVPEVTYEDLGGIRDAIIKIREMIELPLKYPELFQR
LGIDPPRGVLILGPPGTGKTLLAKAVANESDAYFTSINGPEIMSKYYGESEQHLRDVFKE
AESNAPAIIFIDELDSIATKRAEVTGEVERRVVAQLLSLMDGLKTRKNVIVIGATNRPEA
IDTALRRPGRFDREIELRVPDKSGRKEIFQIHTRSMPLTPDVDLDELADRTYGFVGADIA
ALCKEAAMNVLRRVLPSIDLKEQALPREILERLRVSRHDFEEALKIIQPSALREIMIEVP
NVTWDDIGGLTEVKMLLREAVEWPLRYADSFRRVGVEAPKGVLLYGPPGTGKTLLAKAIA
NESQANFITAKGSDLLSKWYGESEKHISEVFKKARQVAPAIVFLDELDALAPVRGSAAGE
PRVTERIVNQLLSELDGLEELRGVIVIGATNRPDIIDPALLRPGRFDEIILVPVPDRGAR
REIFKVHMRQMPVAEDVVLNELVDRTDNFTGADIASVCKKAGRLALREDLNAVVVRRKHF
MEALKLTEPSVTEEMVRYYQNIGGELKRKSAREIERSMYI
NT seq
2283 nt
NT seq
+upstream
nt +downstream
nt
atgactgtgcaaaaagaagagaaagcgagggtcaggctgaaggtggcggaggccgacaaa
agagaggtagggaggggtatagcgcggatcaacgagcgccacataaaggagatgggcgta
tcttacggcgacgtcatccagatcagcgggaggaggagcacggcagccatcgtaggaagc
gccttcccgtctgacatgcaccttgacatcgtcaggatcgacggcataataaggcataac
gcgggcaccacgctgggcgactacgtggaggtgtccagggcaaagtggagcgaggcgaaa
aaggtggtgctcatgcccgtccagaaggggataaggatatacgcctctccagaaagcctg
caggcctcttttttaaaccgccctgtatgccagggggacatagtatcgacttcgacctat
acgccgccgtcgcaatccttcaactcaaaccttatgttcgaggaattttttcgggacttc
ttctcgagcccttcgttcggtttgggcgaggtcaagcttgcgatcgcgtcgaccgtcccg
gccggcgtggtcaagataacggaggtgacagaaattcagctattgcctgaggcgaccgag
gtaataaaaagcgaggtgcccgaggtcacgtatgaggacctgggcgggataagggacgcg
ataataaagataagggagatgatcgagcttccgctgaaataccctgagcttttccagcgg
ctcggcatagacccgcccaggggtgtgctcattttagggccgcccggcaccgggaagact
ctgctcgccaaggccgttgcaaacgagtcggatgcttacttcacgtccataaacggcccc
gagatcatgtccaagtactatggggagtcggagcagcacctgagggacgtgttcaaggag
gcggagagcaacgcacccgccatcatcttcatagacgagctggactcgatagccacaaag
cgggcggaggtgacgggcgaggtggagcggcgggtggtggcccagctcttatccctgatg
gacgggctgaagacgaggaagaacgtcatcgtcataggcgctacgaataggcccgaggcc
atcgatactgccctgagaaggcccgggcgcttcgaccgggagatagagcttcgggtgccg
gacaagtccggccgcaaggagatattccagatacacacgaggagcatgcctctcacccct
gacgtggatttggatgagctggccgacaggacgtacggcttcgtgggggcagatattgca
gcgctttgcaaggaggcggccatgaacgtgctccggagggttctgcccagcatcgacctg
aaggagcaggccctgcccagagaaatactggagcggctcagggtgtccaggcacgacttc
gaggaggccctgaagataattcagccttcggcgcttcgggaaatcatgatagaggtgccg
aacgtgacctgggacgacataggaggcctcacagaggtcaaaatgctgctgagagaggcg
gtggagtggccgctgcgatacgccgattctttccggcgcgttggggttgaggcgcccaag
ggcgtgttattgtacggccctcccggcaccggcaagacgctgcttgccaaggccatagcc
aacgagagccaggccaacttcataacggcgaaggggagcgacctgctctcaaagtggtac
ggcgagtccgagaagcacataagcgaggtgttcaagaaggcccggcaggttgcccccgcc
atcgtgtttttagacgaattggacgcccttgcgcccgtcaggggcagcgctgcgggggag
cccagggtcacggagcgcatcgttaatcagcttctatccgaattggacggcctggaagag
ttgcggggggtcatcgtcataggggcgaccaacaggccggacatcattgacccggcgctg
ctcaggcccggcaggttcgacgagatcatcctggtgccagtgccagaccgtggagcgaga
agggagatattcaaggttcacatgcgccagatgccggtggccgaggacgtcgtgctcaac
gagctcgtggacaggacggataacttcacgggtgcggacatcgcctccgtgtgtaagaag
gcgggccggctggccctcagggaggacctgaacgcagtagtcgtcagacgtaagcacttc
atggaggcgctgaagcttaccgagccctcggtgaccgaggagatggtgcgctactaccag
aatataggcggcgagcttaagcgtaagagcgcaagggagatagaaaggtccatgtatata
tga
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