Methanocella conradii: Mtc_1998
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Entry
Mtc_1998 CDS
T01774
Name
(GenBank) Superfamily II DNA and RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
mez
Methanocella conradii
Pathway
mez03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mez00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Mtc_1998
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mez03019
]
Mtc_1998
03009 Ribosome biogenesis [BR:
mez03009
]
Mtc_1998
Enzymes [BR:
mez01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
Mtc_1998
Messenger RNA biogenesis [BR:
mez03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Mtc_1998
Ribosome biogenesis [BR:
mez03009
]
Prokaryotic type
rRNA helicases
Mtc_1998
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
AAA_22
CMS1
Motif
Other DBs
NCBI-ProteinID:
AFD00738
UniProt:
H8I691
LinkDB
All DBs
Position
1904712..1906082
Genome browser
AA seq
456 aa
AA seq
DB search
MVMFQELSLSAPTLKAIAAMGFEEATPIQGQAIPAALQGRDVIGQAQTGTGKTAAFGIPM
VEAVDIKSEAIQGIVITPTRELAVQVAEELNRIGHFKGVHALPIYGGQDIKRQVSALKRK
PQVIVGTPGRLIDHMKRKTVRLGGIRMVVLDEADEMLDMGFIEDIERILKATPEGRQTLL
FSATIPAPISKLAARFMKDPVSIGIKSRSLTVQGTEQAYLEVQERQKFEALCRLLDVQLP
ALAIVFVRTKRRVDELARALSERGYQAEGIHGDLAQSKRDSVMRSFREGATEVLVATDVA
ARGLDISGVTHVYNFDIPQDPDGYVHRIGRTGRAGKKGIAITFVTPRELGLLRLIERVTR
RPIERRPVPTAAEAFEGKQRAIVEALLKVSEEGDVSRYRGVAESLLEENDSVTMLSAALK
MLSKGDDAEAIPVELTEEHRRHKMERKPKGRRAQKR
NT seq
1371 nt
NT seq
+upstream
nt +downstream
nt
atggtaatgtttcaagaattatctctaagcgcgcccacgctaaaggctattgcagccatg
gggttcgaggaagcgacgcccatccaggggcaggccatacctgcggccttacagggcagg
gacgtcatagggcaggcccagacgggcaccggcaagacggcggcattcggcatacctatg
gtcgaggcagtagacattaaatcggaagccatacagggcatagtcataaccccaacaagg
gagctggccgtacaggtggccgaggagctaaacaggatcggccattttaagggcgtacac
gctcttcctatttatggcggccaggacatcaagcggcaggttagcgccctcaagcgaaag
ccacaggtcatcgtcggcacgcccggccggctcatagaccatatgaagaggaagaccgtc
aggctaggcggcataaggatggtcgtgctagacgaggccgacgagatgctggacatgggg
ttcatcgaggacatagagcgcatcctcaaggccacgccggaaggcaggcaaaccctccta
ttctcagcaaccatacccgcccccatcagcaagctagccgcccgcttcatgaaagaccct
gtatccattggcatcaagtctagatcgttgacagtgcagggcaccgagcaggcttacctg
gaggtacaggaaaggcaaaagttcgaggccttatgccgcctattggacgtgcagcttccc
gcgctggccatagtatttgtaaggaccaagcggcgcgtcgacgagcttgcgagggcgctg
agcgagcggggataccaggccgagggcatccacggcgacctggcccaatcgaagcgggac
agcgtcatgcgctcttttagggaaggggcgactgaggtgctggtggccacagatgtcgcc
gccaggggattggatataagcggcgtgacgcacgtctacaacttcgacatcccgcaggac
ccggacggatacgtccacaggatagggcggacgggccgggcggggaagaagggcattgca
attactttcgtgacccccagggagctggggcttttaaggcttatcgagcgggtgactcgc
cgccccatcgagaggaggcctgtgccgaccgctgccgaggcctttgaggggaagcaaagg
gccatagtcgaagcccttctaaaggtgtctgaagaaggcgatgtttcccgatataggggc
gttgccgagagccttctagaagaaaacgactcagtcaccatgctttccgccgcgctaaaa
atgttgagcaaaggagacgatgcagaagccatccctgtcgagcttaccgaggagcaccgc
cgccataagatggagcgaaagccgaaaggccgtcgagcgcaaaaacgctga
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