Methylobacillus flagellatus: Mfla_0954
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Entry
Mfla_0954 CDS
T00342
Name
(GenBank) DEAD/DEAH box helicase-like protein
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
mfa
Methylobacillus flagellatus
Pathway
mfa03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mfa00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Mfla_0954
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mfa03019
]
Mfla_0954
Enzymes [BR:
mfa01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
Mfla_0954
Messenger RNA biogenesis [BR:
mfa03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Mfla_0954
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
UvrD-helicase
Shikimate_DH
UTP25_NTPase-like
Sacchrp_dh_NADP
P-loop_SecA
HI1480
ERCC3_RAD25_C
Motif
Other DBs
NCBI-ProteinID:
ABE49222
UniProt:
Q1H2C1
LinkDB
All DBs
Position
complement(1001826..1003373)
Genome browser
AA seq
515 aa
AA seq
DB search
MSTDVSITLSNLQFSDLGLAEPILRAIADTGYTHPTPIQAQAIPLVLNGGDLLAGAQTGT
GKTAGFTLPVLHLLHAKPVKVKPGQPRCLILTPTRELAAQVEESVQTYGKHLKLTSMVMF
GGVGINPQIERLKKPLDILVATPGRLLDHAAQKTIDLSAIEILVLDEADRMLDMGFIRDI
KRVLALLPKKRQNLLFSATFSDEIKELADGLLHNPGFVEVARRNTASELVEQAVHLVSQG
HKRDLVAHLIRHHDWKQVLIFTRTKHGANRLAEKLSKDGIAAAAIHGNKSQSARTKALAE
FKNGTLPVLVATDIAARGLDIDQLPQVVNFELPNVPEDYVHRIGRTGRAGCSGAAVSLVD
GEEIKLLKGIERLIKREIPRLDIPGAFVPSDKPGVESRPPRQQPAQARQTKSNRPQAQRE
RSDAAGNSAEPRSGNKPRQGRNHQAKAQGQPQPQAQRSKPQGQGQAVQAKKKPEPLLSEA
ARHQAMPQVGLFVPPQPPKRQFHNTSGQRPNRGRR
NT seq
1548 nt
NT seq
+upstream
nt +downstream
nt
ttgtctactgacgtaagcattaccctttccaacttacaattttccgatctcggcctggca
gaacccatcctgcgtgccattgcagataccggctatacccacccgacccctatccaggcc
caggccattcctttggtattgaatggcggcgacctgctggcaggtgcgcaaaccggcacc
ggcaagacagcgggcttcaccctgcccgtgcttcacctgttgcatgccaagccggtcaag
gtcaagcccggccagcctcgctgcctgatcctgaccccgacgcgcgaacttgccgcccaa
gtggaagaatcggtacaaacctatggcaaacacctgaaattgacatccatggtgatgttc
ggcggtgtgggcatcaacccgcagatcgagcgcctgaaaaagccactggatattctggtc
gccacgcccggccgcctgcttgaccatgcagcgcagaaaaccatagacctgtccgcgatc
gagattctggtcctggatgaggcagaccgcatgctggacatgggctttatccgcgatatc
aagcgcgtactggcattgctgccgaaaaagcgccagaacctgctgttttccgccacgttc
tcagacgagatcaaggagctggccgacggcctgctgcacaaccccggctttgtggaagtg
gccagacgcaatacggcctccgaactggtcgaacaagccgttcacctcgtcagccagggg
cacaagcgcgacttggtcgcgcatctgatccgccaccacgactggaagcaggtgctgata
ttcacccgcaccaagcatggcgccaaccgacttgcggaaaaactcagcaaggacggcatc
gccgctgccgcgattcacggcaacaagagccaatccgcccgcaccaaggcgctagccgaa
ttcaagaacggtaccctgccggtcctggtggcaaccgatattgccgcgcgcggcctcgat
atcgaccagttgccgcaagtggtgaacttcgagttgcccaacgtgccggaagactatgtg
caccgcattggccgtaccggccgcgcaggatgctcgggcgctgccgtctctctggtggat
ggcgaggaaatcaagctgctcaagggcatcgagcgtctgatcaagcgtgaaatcccgcgc
ctggacattcccggcgctttcgttcccagtgataaaccaggcgtggaaagccgcccgccc
aggcagcagcctgcccaagcgcgccaaacgaaaagtaaccgtccgcaagcccagcgtgag
cgcagtgacgcggctggcaacagcgccgaaccgcgctccggcaacaagccgcgtcaaggc
cggaatcaccaggccaaggctcaaggccagcctcagccacaagcgcaacgcagcaagcct
cagggccagggccaggcggttcaagccaagaaaaaaccggaaccgctcttgtccgaagcc
gcacgccaccaggccatgccgcaggtcgggctgttcgtgccgccacagccacccaagcgt
caattccacaatacctctgggcagcgccccaaccggggtcgccgctag
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