Myxococcus faecalis: VZP55_02810
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Entry
VZP55_02810 CDS
T11143
Name
(GenBank) ribonuclease J
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
mfae Myxococcus faecalis
Pathway
mfae03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mfae00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
VZP55_02810
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mfae03019
]
VZP55_02810
Messenger RNA biogenesis [BR:
mfae03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
VZP55_02810
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
Lactamase_B_2
Lactamase_B
RMMBL
Anti-Pycsar_Apyc1
Lactamase_B_6
Motif
Other DBs
NCBI-ProteinID:
XSF04766
LinkDB
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Position
692200..693840
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AA seq
546 aa
AA seq
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MLQVIPLGGLGEIGLNSLVIACNGEMLLIDAGLMFPSEGMPGVDIIIPDFTHLKQNAACL
KGVVLTHGHEDHLGALPYLLGEVNVPVYGTRFTLAMARHRLGELGVEADLREIEPREPFN
VGTMFKVEASRVTHTVPDAVGFIIRTPEGTFIHTGDFKLDPDPIDGLRTDLERWGEAGEE
GVLCLLSDSTNSELTEETGSERVVEQTFERLFKGATGRIVVALFSSNLHRVRHLLALAEK
LGRKVALQGRSMQRNVEMARQLGYLDVPDSLFVHLDTVPLLPAQRVLVLTTGAQGEPRAG
LSQLASGDGPLKVGPGDLVVLSSRPIPGNERGVGALIDQLHWRGAKVVYAQVEPGVHVSG
HASRPQQQRVLELVRPSHFIPVHGEGRHLHRHLATAREAGLEPAQCLLAQDGDVVGFEEG
RGRFTGSVPSGRIFKDRFGGGMVTPDTLHERVRLSETGLVAAVVVLQRGTQQLVGGPQLS
GQGLSLDEQVLLPRVAQDARALFEELSVQLRGDDALVREELTRVVRRAFRLYSSKRPLVV
PMVVRV
NT seq
1641 nt
NT seq
+upstream
nt +downstream
nt
atgcttcaagtcattcccctgggcggcctgggagaaatcggcctcaactccctggtcatc
gcctgcaacggggagatgctgctcatcgacgcgggcctgatgttcccctccgaggggatg
cccggcgtcgacatcatcatcccggacttcacccacctgaagcagaacgccgcctgcctc
aagggcgtggtgctcacgcacggccacgaggaccacctgggcgcgctgccctacctgctg
ggcgaggtgaatgtgcccgtgtacggcacgcgcttcacgctggccatggcgcgccaccgg
ctgggcgagctgggcgtggaggcggacctgcgcgaaatcgagccgcgcgagccgttcaac
gtcggcaccatgttcaaggtggaggccagccgcgtcacgcacaccgtgccggacgcggtg
ggcttcatcatccgcacgcccgaaggcaccttcatccacaccggcgacttcaagctggac
ccggaccccatcgacgggctgcgcaccgatttggagcgctggggcgaggccggcgaggag
ggcgtgctgtgcctcttgtcggactccaccaactccgagctgacggaggagaccggcagc
gagcgcgtggtggagcagaccttcgagcgcctgttcaagggcgccaccggccgcatcgtc
gtggccctgttctcctccaacctgcaccgcgtgcgacacctgctggcgctcgcggagaag
ctggggcgcaaggtggccctgcagggccgcagcatgcagcgcaacgtggagatggcgcgg
cagctgggctacctggacgtgcccgactcgctcttcgtgcacctggacacggtgccgctg
ctccccgcccagcgcgtgctcgtgctcaccaccggcgcgcagggagagccccgcgcgggc
ctgtcgcagctcgcctccggtgacgggccgctgaaggtgggccccggagacctggtggtg
ctcagctcccgccccatccccggcaacgagcgcggcgtgggggcgttgatcgaccagctg
cactggcggggcgcgaaggtcgtgtacgcccaggtggagcccggcgtccacgtgtccggc
cacgccagccggccccagcagcagcgcgtgctggagctggtgcgccccagccacttcatc
cccgtccacggtgagggccgccacctgcaccgacatctggccaccgcccgtgaggccggc
ctggagcccgcgcagtgcctgctggcccaggacggcgacgtcgtgggcttcgaggagggc
cggggccgcttcaccgggagcgtgccctccggccgcatcttcaaggaccgcttcggaggc
gggatggtgacgccggacacactccacgagcgggtccgcctgtcggagacggggctggtg
gccgccgtcgtggtgctgcagcggggcacgcagcagctggtgggcggcccccagctgtcg
ggccagggcctgtcgctggatgaacaggtgctgctgccccgggtggcccaggacgcccgg
gcgctcttcgaggagctgtccgtccagctgcggggcgacgacgccctggtgcgagaggaa
ctcacccgggtggtgcgccgtgcgttccgactgtacagctccaagcgccccctggtggtg
cccatggtcgtcagggtgtag
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