Myxococcus faecalis: VZP55_05150
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Entry
VZP55_05150 CDS
T11143
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
mfae Myxococcus faecalis
Pathway
mfae03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
mfae00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
VZP55_05150 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mfae03400
]
VZP55_05150 (mfd)
Enzymes [BR:
mfae01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
VZP55_05150 (mfd)
DNA repair and recombination proteins [BR:
mfae03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
VZP55_05150 (mfd)
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Ortholog
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Gene cluster
GFIT
Other DBs
NCBI-ProteinID:
XSF05215
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Position
1279100..1282693
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AA seq
1197 aa
AA seq
DB search
MDSPYTQRLDGEAARDGGVPLVAADTFSRLLGELRAGQRTRTQGLKGAARGHVLARLHRE
AKAPLVCVAADEEAADSLASDLAFFLGGTGTLREPGVLRLPADEVLPYDELSPDAAVVTE
RIGALYHLARGTRFPVLVLSLRALYRRMLRPDVMARLTDRVTVGQEYDRDALARKLSRMG
YQNSPMVEDVGTFSVRGGLLDVFSPLYDKPVRLEFFGDTIDSIRAFDPESQRTVDALKEV
DLVPARELLLTEDTRPRAEAAARAVADRINLPTIQLRERLDALREGLPGFGLEGLLPGLF
EGGLATVFDFLRAWSPEGPVFYLDDPLELSRAADALWEELERTFAQAEERKDLVCPPAEH
FLSRDAVEQQLSAYRVVEGGGLSLTQSEKPPVLFQFGGTQDLREAILAHHGEEGALQPLV
ERLQRWRDSRVACAVACGTLSQADRLKRLLLDRNVMVKVHTEPMKDASALYEPSVWAHLF
TGEVSQGFVDGGGGLALLSDEEIFGVRARRRVKRGKKLDAFAAGFKDLKEGDLIVHTDFG
IGRYSGLTKMQVNGVPGDFLVLEYAGRDKIYLPVGRMRLIQKFTGGNPETVQLDKLGTTS
WEKTKKRVKEQLLKMAAELLQIAASRRAHPGHAFSAPDRYFAQFEADFEFEETPDQAKAI
EDVLSDMQKPEPMDRLVCGDVGYGKTEVAMRAAFKATLDRKQVAVLVPTTVLAQQHFLSF
KKRFKDYPVTVEVISGLKKPPEVREILKRAKEGKVDILIGTHKLLGGEVAFKDLGLMIVD
EEQRFGVKQKESLKKWRSQIDVLTLTATPIPRTLHMSMSGVRDMSIIATPPQDRRAIRTF
VMKYDPMVVKEAIEREIARGGQVFFVHNRVESLPSMEQQLRELVPQLSIGVAHGQMGEGQ
LEKVMLEFTERKHQVLLCTAIIESGIDISSANTMIVNRADQFGLAQLYQLRGRVGRSKER
AYAYLLVPTRRAVTRDAQRRLEVLQNFTELGAGFSIASHDLEIRGAGNLLGEKQSGAIAE
IGFDMYAQLLEEAVAELQGQPPKVQIEPDVTLPMPALIPDDYVADVHQRLVFYKRFSQAS
HPDEVTDLRAELVDRYGEAPDEVDHLSELTLLKIDMRDLRLRGLEVGPQRLVVTLGADAL
LDGPKVAGLVQRSKGYYRLTPDMKLIARVAQGTQGHDLIAEARKVLRDLDHCSLPRN
NT seq
3594 nt
NT seq
+upstream
nt +downstream
nt
atggacagtccttacacacagaggttggatggcgaggcggcgcgggacggtggcgtgcct
ctcgtggcggcggacaccttctcccggctgctcggggagctgcgcgcaggccagcgcaca
cgcacccagggcctgaagggcgcggcccggggccacgtgctcgcccggctgcatcgcgag
gcgaaggcaccgctggtgtgcgtggcggcggacgaggaggcggccgacagcctggcctcc
gacctggccttcttcctgggcgggacgggcacgctgcgagagccgggggtgctgcggctg
cccgcagacgaggtgctcccctacgacgagctgtccccggacgcggccgtggtcaccgag
cgcatcggcgcgctgtaccacctggcccggggcacgcgcttcccggtgctggtgctgtcg
ctgcgcgcgctgtaccgccgcatgctgcgcccggacgtcatggcccggctcacggaccgg
gtcacggtgggccaggagtacgaccgcgacgcgctggcgcggaagctctcgcgcatgggc
taccagaacagccccatggtggaggacgtggggacgttctccgtgcgcggagggctgctc
gacgtcttcagcccgctctacgacaagccggtgcgcctggagttcttcggtgacaccatc
gactccatccgcgccttcgacccggagtcgcagcgcacggtggacgcgctgaaggaagtg
gacctggtgcccgcgcgggagctcctgctcaccgaggacacccgtccccgcgcggaggcc
gccgcgcgcgccgtcgccgaccgcatcaacctgcccaccatccagctgcgcgagcggctg
gacgcgctgcgcgagggcctgcccggcttcgggctggaggggctgctccccgggctgttc
gagggcgggctggccacggtgttcgacttcctgcgcgcgtggagccccgaggggcccgtc
ttctacctggacgacccgctggagctgtcgcgcgcggcggacgcgctgtgggaggagctg
gagcgcaccttcgcccaggccgaggagcgcaaggacctggtgtgcccgccagccgagcac
ttcctgtcgcgcgacgcggtggaacagcagctgtccgcctatcgcgtcgtcgagggcggt
gggctgtcgctgacgcagtcggagaagccgccggtgttgttccagttcggcggcacgcag
gacctgcgggaggccatcctcgcgcaccatggcgaggagggcgcgctgcaacccctggtc
gagcggctgcagcgctggcgcgactcgcgcgtggcgtgcgcggtggcgtgcggcaccctg
agccaggcggaccggctcaagcggctcttgctcgaccgcaacgtcatggtgaaggtgcac
accgagcccatgaaggacgcgtcggcgctgtacgagccgtccgtctgggcgcacctcttc
acgggcgaggtgagccagggcttcgtggacggcgggggcgggctggcgctcctgtcggac
gaggagatcttcggcgtccgcgcgcgtcggcgcgtcaagcgcggcaagaagctggacgcg
ttcgccgcgggcttcaaggacctgaaggaaggcgacctcatcgtccacaccgacttcggc
atcggccgctactcgggcctgacgaagatgcaggtgaacggcgtgcccggggacttcctc
gtcctggagtacgcggggcgggacaaaatctacctgccggtgggccgcatgcggctcatc
cagaagttcaccggcggcaacccggagacggtccagctcgacaagctgggcacgacgagc
tgggagaagacgaagaagcgcgtcaaggagcagctgctcaagatggcggcggagctcctg
caaatcgccgcctcgcgccgcgcgcacccgggacacgccttcagcgcgccggaccgctac
ttcgcccagttcgaggcggacttcgagttcgaggagacgccggaccaggccaaggcgatt
gaggacgtgctctccgacatgcagaagccggagcccatggaccggctggtctgcggcgac
gtgggctacggcaagacggaggtcgccatgcgcgcggccttcaaggcgacgctggaccgc
aagcaggtggcggtgctggtgcccaccacggtgctggcgcagcagcacttcctctccttc
aagaagcgcttcaaggactaccccgtcacggtggaggtcatctccggcctgaagaagccg
ccggaggtgcgcgaaatcctcaagcgcgccaaggagggcaaggtcgacatcctcatcggc
acgcacaagctgttgggcggcgaggtggccttcaaggatttggggctgatgatcgtcgac
gaggagcagcgcttcggcgtgaagcagaaggagtcgctgaagaagtggcgctcccagatc
gacgtgctgacgctgacggcgacgcccatcccccgcacgctgcacatgagcatgtcgggc
gtgcgcgacatgagcatcatcgccacgccgccgcaggaccggcgcgccatccgcaccttc
gtgatgaagtacgacccgatggtggtgaaggaggcgattgaacgcgagattgcccgcggc
gggcaggtgttcttcgtgcacaaccgcgtcgagtcgctgccctccatggagcagcagctg
cgcgagctggtgccgcagctgtccatcggcgtggcgcacggacagatgggcgaggggcag
ctcgagaaggtcatgctggagttcaccgagcgcaagcaccaggtgctgctgtgcacggcc
atcatcgagagcggcatcgacatctccagcgccaacacgatgattgtcaatcgggcggac
cagttcggcctggcgcagctctaccagctgcgaggccgcgtgggccgctccaaggagcgc
gcgtacgcgtacctgctggtgcccacgcgccgggcggtgacgcgcgacgcgcagcgccgg
ctggaggtgctccagaacttcaccgagctgggcgcgggcttctccatcgccagtcatgat
ttggagattcgcggcgcgggcaacctgctgggcgagaagcagtccggcgccatcgccgag
attggcttcgacatgtacgcgcagctcctggaggaggccgtcgcggagctgcagggccag
ccgcccaaggtgcagattgaaccggacgtcacgctgcccatgcccgcgctcatcccggac
gactacgtggcggacgtgcaccagcggctcgtcttctacaagcgcttcagccaggccagc
cacccggacgaggtgacggacctgcgcgcggagctggtggaccgctacggcgaggccccg
gacgaggtggaccacctgtccgagctgacgctgctgaagatcgacatgcgcgacctccgg
ctgcgcggcctggaggtggggccgcagcgcctggtggtgacgctgggcgcggacgcgctg
ctcgacggaccgaaggtcgcggggctggtgcagcgctcgaagggctactaccgcctcacg
ccggacatgaagctcatcgcccgcgtggcgcagggcacccaggggcacgacctcatcgcc
gaggcgcgcaaggtgctccgagacctggaccactgctcgctgccgaggaactga
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