Myxococcus faecalis: VZP55_05195
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Entry
VZP55_05195 CDS
T11143
Symbol
ligD
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
mfae Myxococcus faecalis
Pathway
mfae03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
mfae00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
VZP55_05195 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mfae03400
]
VZP55_05195 (ligD)
Enzymes [BR:
mfae01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
VZP55_05195 (ligD)
DNA repair and recombination proteins [BR:
mfae03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
VZP55_05195 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_M
DNA_ligase_A_C
DNA_primase_S
DNA_ligase_OB_2
mRNA_cap_enzyme
Motif
Other DBs
NCBI-ProteinID:
XSF05223
LinkDB
All DBs
Position
1291416..1294079
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AA seq
887 aa
AA seq
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MNRARTRLQTYRRKRDFRCTPEPAPEAPASSDGAPVFVVHKHDASSLHYDLRLQVDGALA
SWAVPKGPSHDPGDKRLAVETEDHPLAYADFEGHIPDDAYGGGDSLLWDRGTFDTVPPGQ
AHAQREHGRLHVELQGEKLRGRWHLIRTRLRGSAKKPQWLLFKAKDETADPSLDITTERP
ESVKSGQVQTRGPVKRGARKRPASRAREVTTTSTKQRKPRALATPRTPAKLLERLGAPML
ARLSVPEEVTDATHVYEVKYDGFRALAALVGGKLALRSRRGNDLSKRFPALAEALRGLRV
KDVVLDGEIVALDAKGRSRFQLLQQGLEGVEQRFVVFDVSWLDGEDLRGLPLEERRARLE
RVMKHVKLPIQLAERIELPMKRALDQARRKGWEGLIAKRRGSTYVDTRSGDWLKLKVVAG
QEVVILGYLPIQNERSRTELGALLVGVHREDGFHDVGKVGTGFTSKDRRELRRLLDEDVA
RKPAAVDAKPRKGAVWVKPRHVAQVNFSEWTEDGRLRQPVYQGLRIDKAPTEVVRERPAP
ASRGARKTSAETSTAAGTRQRRATAPVRGASRRTASAGGSRKRPSTGSLRAPRAQAARTS
PPSSRDGHATLTHGDRVLFPEAGLTKADVFEYYRAVAPLMVPVLEDRPISVQQWPAGIQA
PGFFRHELSGIPAWVPTQRVRHLDKTLRHVNVNGEEPLLWLANQSALTLHMWLSRAPRLS
QPDFLAMDLDPGKGGWSDMVTVALALRELLEEQGLASYPKTSGKRGLHVMIPLAPGHTYA
KVQAHADALAHALEARLGELATTVRGIRARKGRLYLDAGQNARGKTVVAPYSLRAKEGAP
FSAPLKWSEVTRRLDPARFNLRTLEKRLDKVGDLFAPALKHPQRLPD
NT seq
2664 nt
NT seq
+upstream
nt +downstream
nt
gtgaaccgcgcacgcacacgactccagacctaccgccgcaagcgggacttccgctgcacc
cccgagcccgctccggaggcgccagcctcctcggacggcgcaccggtcttcgtggtgcac
aagcacgatgccagcagcctccactacgacttgcgcctgcaggtcgatggcgcgctggcg
agctgggccgtgcccaaggggcccagccatgacccgggtgacaagcggctcgcggtggag
accgaggaccatcccctcgcgtacgccgacttcgagggacacatccccgacgatgcctac
ggcggtggggactccctgctctgggaccggggcacgttcgacacggtccctccgggacag
gcccacgcgcagcgcgagcacgggcggctccacgtcgagctgcagggcgagaagctgcgc
ggacgctggcacctcatccgcacccggctccgggggagcgcgaagaagccgcagtggctg
ctcttcaaggcgaaggacgagacggcggacccctcgctcgacatcaccacggagcggccc
gagtcggtgaagagcggacaggtccagacgcggggcccggtgaagcggggcgcgaggaag
cggcccgcgtcgcgcgcgcgggaggtcacgaccacgtccacgaagcagcgcaagcctcgt
gcgctggcgacacctcgcacgccggcgaagctgctggagcgattgggcgcgcccatgctg
gcgcgcctgtcggtgccggaggaggtcaccgacgcgacgcacgtctacgaggtgaagtac
gacggcttccgcgcgctggcggcgctcgtgggcggcaagctcgcgctgcggagccggcgg
ggcaatgacctgtcgaagcgcttccccgcgctcgccgaggccctgcgcgggctgcgcgtg
aaggacgtggtgctggacggcgaaatcgtcgcgctggatgcgaagggccgctcgcgcttc
cagttgctccagcagggcttggagggcgtggagcagcgcttcgtggtgttcgacgtctcg
tggctcgacggtgaggacctgcgcggcctgccgctggaggagcgacgggcgcggctggag
cgggtgatgaagcacgtgaagctcccgattcagctcgcggagcgcatcgagctgccgatg
aagcgcgcgctggaccaggcgcgcaggaagggctgggaggggctcatcgcgaagcggcga
ggctccacgtacgtggacacgcgctcgggcgactggctcaagctcaaggtggtggcggga
caggaggtggtcatcctcgggtacctgcccatccagaacgagcgctccaggacggagctc
ggcgcgctgctcgtcggggtgcatcgcgaggacggcttccatgacgtgggcaaggtcggc
acgggcttcacgtcgaaggaccggcgcgagctgcggcggctgctcgacgaggacgtggcg
cgcaagcccgcggccgtggacgcgaagccgcgcaagggcgcggtgtgggtgaagccccgg
cacgtggcgcaggtgaacttcagcgagtggaccgaggacggacggctgcgccaacccgtg
taccaggggctgcgcatcgacaaggctccgacggaggtggtccgtgagcgtcccgcgcct
gcctcgcgaggggcacggaagacctcggctgagacctccacggcggctggcaccaggcag
cgccgcgccaccgcgcccgtgcgtggcgcttcgcggcgcacggcctccgctggcggctca
cgcaaacgtccctcgacgggctcgctcagagcaccgcgcgcccaggccgcgcgcacctcc
ccgccctcatcgcgcgacgggcacgccacgctgacgcacggggaccgcgtgctcttcccg
gaggccggcctgacgaaggcggatgtcttcgagtactaccgggcggtcgcgcccctgatg
gtccccgtcctcgaggaccgtcccatctccgtgcagcagtggcccgcgggaatccaggcg
ccgggcttcttccgacacgagctgtcgggcatccccgcgtgggtgcccacccagcgcgtg
cgccacctggacaagacgctgcgccacgtgaacgtgaacggcgaggagcccctgctgtgg
ctcgccaaccaatccgcgctcacgctccacatgtggctgagccgcgcgcccaggctctcg
cagcccgacttcctggccatggacctggacccgggcaagggcggctggtccgacatggtg
acggtggcgctcgcgctgcgcgagctgctcgaggagcagggcctcgccagctatcccaag
acctccggcaagcgcggcctgcacgtcatgattcccctggcccccggacacacgtacgcg
aaggtccaggcccacgcggacgcgctggcccatgcgctggaagcgcgactgggagagctg
gccaccacggtgcgcggcatccgcgcgcgcaagggccggctctacctggacgcgggacag
aacgcgcgcggcaagacggtcgtcgcgccctactcgctccgcgccaaggagggcgcgccc
ttctccgcgcccctgaagtggagcgaggtcacccgacgcctcgaccccgcgcgcttcaac
ctccgcacactcgagaagcgcctggacaaggtgggggacctgttcgctcccgcgttgaag
catccgcagcggctgccggactga
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