Myxococcus faecalis: VZP55_09305
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Entry
VZP55_09305 CDS
T11143
Name
(GenBank) RtcB family protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
mfae Myxococcus faecalis
Brite
KEGG Orthology (KO) [BR:
mfae00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
mfae03016
]
VZP55_09305
Enzymes [BR:
mfae01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
VZP55_09305
Transfer RNA biogenesis [BR:
mfae03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
VZP55_09305
Prokaryotic type
tRNA splicing ligases
VZP55_09305
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
XSF06008
LinkDB
All DBs
Position
complement(2287843..2289000)
Genome browser
AA seq
385 aa
AA seq
DB search
MSPRVLPAEPGCVPILAWTRRLPPGAEEQLRLIASQPYVVEHVAAMPDLHVARRIAVGSV
FATGHHIVPGALGGDLGCGVRAYRFAYPAALLGRDLLESLLERLSRVIPVGDATHRGRGL
ALPVELESPPLSTQRLGREWARLAPRHLGTLGGGNHFVELDRDAGGDLWLLLHSGSRGVG
ATIADHHLRVATALGEGTLPGLSLHTPEGAACLADTQWACRFARANRDVLAARALEVLSD
VLGITPDADATVDVHHNHVAPEEHFGRTLWVHRKGAVGLEAGQRGLIPGSMGTASYVVEG
LGEPRSFRSCSHGAGRVLSRTEARARIRPAALEHALRRVVHDAGKADSLVEEAPAAYRDI
AEVLEDEADLVIPVRRLTPIAVLKG
NT seq
1158 nt
NT seq
+upstream
nt +downstream
nt
atgagcccgcgcgtcctccccgccgagcccgggtgcgtgcccatcctcgcctggacgcgc
cggctgccaccgggcgcggaggagcagctgcgcctcatcgcctcccagccctatgtcgtc
gagcacgtggccgcgatgccggacctccacgtcgcgcggcgcatcgcggtgggctccgtg
ttcgccaccgggcatcacatcgtgcccggcgcgctcggaggagacctgggctgcggcgtg
cgcgcgtatcgcttcgcgtatcccgccgcgctgctcggtcgagacctgctggagtcgctg
ctcgagcgtctgtcccgggtcatcccggtgggagacgccacgcaccggggcagggggctc
gcgctgcccgtcgagctggagtcacccccgctctccacccagcgactgggtcgcgagtgg
gcgcgactggcgccccggcacctgggcacgctcggtggaggcaaccacttcgtcgagctg
gaccgggacgcgggcggagacctgtggttgctcctgcactccggctcgcggggcgtgggc
gccaccatcgccgaccaccacctccgcgtcgccacggcgctcggggagggcacgctgccg
ggcctgagcctgcacacccccgagggtgccgcgtgcctcgcggacacccaatgggcctgc
cgcttcgcccgtgccaatcgcgacgtgctcgccgcccgcgcgctggaggtgctgtccgac
gtgctcggcatcacccccgacgccgacgccaccgtggacgtccaccacaaccacgtggcg
ccggaggagcacttcggccgcacgctctgggtccaccgcaagggcgccgtgggcttggag
gccggacagcgcggcctcatccccggctccatgggcaccgcctcctatgtggtggagggc
ctgggagagccccgctcgttccgctcctgctcccacggcgccggacgtgtcctctcccgg
acggaggcgcgggcccgcatccgtcccgccgccctggagcacgccctgcgccgcgtggtg
catgacgccgggaaggccgactccctggtggaggaggcccccgccgcctaccgggacatc
gccgaggtgctcgaggacgaggccgacctcgtcatccccgtgcgccggctgacgcccatc
gccgtcctcaagggctga
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