Myxococcus faecalis: VZP55_20235
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Entry
VZP55_20235 CDS
T11143
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
mfae Myxococcus faecalis
Pathway
mfae03030
DNA replication
mfae03430
Mismatch repair
mfae03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
mfae00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
VZP55_20235 (dnaE)
03430 Mismatch repair
VZP55_20235 (dnaE)
03440 Homologous recombination
VZP55_20235 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
mfae03032
]
VZP55_20235 (dnaE)
03400 DNA repair and recombination proteins [BR:
mfae03400
]
VZP55_20235 (dnaE)
Enzymes [BR:
mfae01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
VZP55_20235 (dnaE)
DNA replication proteins [BR:
mfae03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
VZP55_20235 (dnaE)
DNA repair and recombination proteins [BR:
mfae03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
VZP55_20235 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
DUF655
DUF4795
Motif
Other DBs
NCBI-ProteinID:
XSF08117
LinkDB
All DBs
Position
4916081..4919632
Genome browser
AA seq
1183 aa
AA seq
DB search
MSFTHLHLHTLYSLLDGAIRMKDLIKTVKEKGMTSVAVTDHGNMFGAIDFYKKAKDAGIK
PILGMEAYVAGPKGREDRSEKVSHHLILVAKNAEGYANLRYLSSTAYMQGFYYHPRIDKK
VLADHSKGLFALTACLGGEVTSACFRGDMDHARRAAQEYKDIFEPGHFFLEVQSNGMPEQ
DKANENLMQLSRDLDIPLCATADAHYIKREDARAHELLMCIASGKTLADNKRLKHATDKL
YVTSPTEMLEFFKDTPEAVHNTQRIAEQCNLELKLGKPMLPTFKVPDSHTPDSFMAELAY
EGLRERFNELAATVTYPIDREQYQARLSLEIGVIQKMGFSGYFLIVQDFINWAKKMGIPV
GPGRGSGAGSLVAYALRITDVDPIPYNLLFERFLNPERVSMPDFDIDFCQDRRDEVIQYV
GRKYGEMNVGQIITFGSLKAKSVLRDVCRVFALPFSEGDRIAKLVPEVLNITLKEAIEME
PRLKEMMEKPSNIGEVEGKPVTTKDVLEIALALEGLHRQPGMHAAGVVIADKPLWEFVPV
YQPPGEKTLITQFAKDEVEAAGLVKFDFLGLKTLTVIQHALDLVKRNHGKDIPRHEIPLN
DDKVWELMAKGDTAGVFQMESSGFTEMVVKLKPSCFEDVIAAGALYRPGPLDSGMVDVFI
NRKHGREKVSYPHPALEPVLKDTYGVIVYQEQVMQISQVLGGYTLGRADLLRRAMGKKKA
EVMQAERAGFLEGCAKNNVDLKVAGEIFDLMEKFAEYGFNKSHSAAYGLVTIHTAWLKAH
YPCEFMAALLSSEKDNTDKVVKHIGEARESGLQVLPPDVNQSDLQFGAVEGKIRFGLGAI
KGVGEGAIESILDARKDGHFKSLFDFCERVDSRKVNRKVLEALVKAGSFDFEKRPRRQIF
DTIEKAMNRGSASQKDKAAGQSSLFGMLAGPASGGAGLKDDYVVVEEWSEKERLALEKEA
IGFYVSGHPLHQYDKELKRYAKPITAVQRARKDDKLTVAGVVTVLRERPTKTGKRMAWVT
IEDLSGSIELVCFPGKEGTRSVMGSNGKWTKQGPKPGFENWEHLLKSDDPILVTGTVQIS
QRDEDSPTPELIVDNIQSLKEVREKRTKRLELRVPADLLTEDRVAKLNDLAKKYAGATPV
AVSVLFPGEGEALIGNTSLKVQVHDDLLLAVDRLFGMKVVEFG
NT seq
3552 nt
NT seq
+upstream
nt +downstream
nt
atgtcctttacccacctgcaccttcacaccctgtactcactgctcgatggggccatccgg
atgaaggacctcatcaagacggtgaaggagaaggggatgacgagtgtcgccgtgacggac
cacggcaacatgttcggcgccatcgacttctacaagaaggcgaaggacgcgggcatcaag
cccatcctcggcatggaggcgtacgtcgccggccccaaggggcgtgaggaccgctcggag
aaggtctcccaccacctcatcctcgtggcgaagaacgcggagggctacgccaacctgcgc
tacctgtcgtccacggcgtacatgcagggcttctactaccacccgcgcatcgacaagaag
gtgctcgccgaccacagcaagggcctgttcgcgctgacggcgtgcctgggcggcgaggtg
acgagcgcgtgcttccgcggggacatggaccacgcccgccgcgcggcccaggagtacaag
gacatcttcgagcccgggcacttcttcctggaggtgcagtccaacgggatgcccgagcag
gacaaggccaacgagaacctgatgcagctgtcgcgggacctcgacatcccgctgtgcgcc
accgcggacgcgcactacatcaagcgcgaggacgcgcgcgcacacgagctgctcatgtgc
atcgccagcggcaagacgctggcggacaacaagcgcctgaagcacgccaccgacaagctc
tacgtcaccagccccacggagatgctggagttcttcaaggacacgcccgaggcggtccac
aacacccagcgcatcgccgagcagtgcaacctggagctcaagctgggcaagcccatgctg
cccaccttcaaggtgcccgacagccacacgccggacagcttcatggcggagctggcctac
gagggcctgcgcgagcgcttcaacgagctggcggccacggtgacctaccccatcgaccgc
gagcagtaccaggcgcgcctgtcgctggagattggcgtcatccagaagatggggttcagc
ggctacttcctcatcgtccaggacttcatcaactgggcgaagaagatgggcatccccgtg
ggcccgggccgtggctccggcgccggcagcctggtggcgtacgcactgcgcatcaccgac
gtggaccccatcccgtacaacctcctgttcgagcgcttcctgaatccggagcgcgtgtcg
atgcccgacttcgatatcgacttctgccaggaccggcgcgacgaggtcatccagtacgtc
ggccgcaagtacggcgagatgaacgtggggcagatcatcaccttcggctcgctgaaggcc
aagagcgtgctgcgcgacgtgtgccgcgtgttcgcgctgccgttcagcgagggagatcgc
atcgcgaagctggtgccggaggtgctcaacatcaccttgaaggaggccatcgagatggag
cctcgcctcaaggagatgatggagaagcccagcaacatcggcgaggtggagggcaagccc
gtcacgacgaaggacgtgctggagatcgcgctcgcgctggagggcctgcaccgccagccc
ggcatgcacgcggccggcgtggtcatcgccgacaagcccctgtgggagttcgtgcccgtc
taccagccgccgggtgagaagacgctcatcacccagttcgccaaggacgaggtggaggcg
gcgggcctggtgaagttcgacttcctcggcctgaagacgctcacggtgattcagcacgcg
ctggacctggtcaagcgcaaccacggcaaggacatcccccggcacgagattccgctcaac
gacgacaaggtctgggagctgatggccaagggcgacacggccggcgtcttccagatggag
tccagcggcttcacggaaatggtggtgaagctcaagccgtcctgcttcgaagacgtcatc
gccgccggcgccctctaccgcccgggtccgctggactccggcatggtggacgtcttcatc
aaccgcaagcacgggcgcgagaaggtgtcgtatccgcaccccgcgctggagccggtgctc
aaggacacgtacggcgtcatcgtgtaccaggagcaggtgatgcagatttcgcaggtcctg
gggggctacaccctgggccgcgcggacctgcttcgccgcgccatgggcaagaagaaggcc
gaggtcatgcaggccgagcgcgccggcttcctcgaggggtgcgcgaagaacaacgtcgac
ctgaaggtcgccggtgaaatcttcgacctgatggagaagttcgccgagtacggcttcaac
aagagccactcggcggcgtacggcctcgtcacgattcacacggcgtggctgaaggcgcat
tacccgtgcgagttcatggcggcccttctctccagtgagaaggacaacacggacaaggtg
gtgaagcacatcggcgaggcgcgcgagtcgggcctgcaggtgttgccgccggacgtgaac
cagtcggacctgcagttcggcgcggtggaggggaagatccgcttcgggctgggcgccatc
aagggcgtgggcgagggcgccatcgagtccatcctggacgcgcgcaaggacgggcacttc
aagagcctgttcgacttctgcgagcgcgtggacagccgcaaggtgaaccgcaaggtgctc
gaggcgctggtgaaggcgggctcgttcgacttcgagaagcggccgcgtcggcagatcttc
gacaccatcgagaaggcgatgaaccggggctcggccagccagaaggacaaggcggcgggg
cagagctcgttgttcgggatgctggcggggccggcgtcgggcggggcggggctgaaggac
gactacgtggtggtggaggagtggtcggagaaggagcggctggcgctggagaaggaggcc
atcggcttctacgtgtcgggccatccgctgcatcagtacgacaaggagctcaagcgctac
gcgaagccgatcacggcggtgcagcgcgcgcgcaaggacgacaagctcacggtggcgggc
gtcgtcacggtgctgcgcgagcggcccacgaagacgggcaagcgcatggcgtgggtgacg
attgaagacctgtcgggctccatcgagctggtgtgcttcccgggcaaggaggggacgcgc
agcgtgatggggagcaacggcaagtggacgaagcaggggcccaagccggggttcgagaac
tgggagcacctgctgaagtcggacgacccgattcttgtgacggggacggtgcagatcagc
cagcgtgacgaggactcgcccacgccggagctcatcgtcgacaacatccagagcctgaag
gaggtccgggagaagcgcaccaagcggctggagctgcgggtgccggcggacctgctgacg
gaggaccgggtggcgaagctcaacgacctggcgaagaagtacgcgggagccacgcccgtg
gccgtcagcgtgctgttcccgggtgagggcgaggcgctcatcgggaacacgtccctgaag
gtccaggtgcatgacgacctgctgctcgccgtggaccgactgttcgggatgaaggtggtc
gagttcgggtga
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