Myxococcus faecalis: VZP55_21355
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Entry
VZP55_21355 CDS
T11143
Symbol
rho
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
mfae Myxococcus faecalis
Pathway
mfae03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mfae00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
VZP55_21355 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mfae03021
]
VZP55_21355 (rho)
03019 Messenger RNA biogenesis [BR:
mfae03019
]
VZP55_21355 (rho)
Transcription machinery [BR:
mfae03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
VZP55_21355 (rho)
Messenger RNA biogenesis [BR:
mfae03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
VZP55_21355 (rho)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
AAA_25
Spore_III_AA
NACHT
S1CSD-TOTE-2
AAA_22
OB_RNB
Motif
Other DBs
NCBI-ProteinID:
XSF08331
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All DBs
Position
5189681..5191315
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AA seq
544 aa
AA seq
DB search
MRKARTSREKAADVAVPVEADDKPRRKRAAAKTADREEAEKPSRSRRAPRRDEDTGTEVE
GDSAEASAEPPRPVLTPISRPVRDDDLQEARISGEDESPAASLPPPPEAPEAPTITEVSR
DGAPMQVIKLNDLKRMKITDLSRMAHDVGLENYQGLKKQDLIFALLGGIADKRFEVHAEG
VMELLSDGFGFLRSADSDYQPSPDDIYVSPSQVRRFNLRPGDTVTGPIRQPREGERFFAL
QKVDKVNFTDPMSDAARERILFDNLTPLYPTRKLKLEHESSEMTTRIIDMFCPIGLGQRC
LIVAPPKAGKTVLLQNIAHAISRNHPDVYLIVLLVDERPEEVTDMERSVRGEVVSSTFDE
PATRHVQVAEMVIDKAKRLVEQKYDVCILLDSITRLARAYNTVVPASGKILSGGVDANAL
HKPKRFFGAARNIEEGGSLTIIGTALIDTGSRMDEVIFEEFKGTGNSEIVLDRKLMEKRI
FPTLDINKSGTRKEELLLGPGDLVRITALRQVLHPFTPIDAMEFVLKHMRPTATNADFLG
SMNR
NT seq
1635 nt
NT seq
+upstream
nt +downstream
nt
atgcgcaaagcccgtacttcgagagagaaggccgccgacgtcgctgttcccgtcgaggcc
gacgacaagccccgtcgcaagcgcgcggcggcgaagaccgccgacagggaggaagccgag
aagccgtcccgttcgcgccgcgcccctcgccgtgacgaggacacgggcaccgaggtggag
ggcgactccgccgaggcgagcgccgagccgccccgcccagtgctgacgccgatctcccgt
ccggtccgcgacgacgacctccaggaggcgcgcatctccggtgaggacgagtcccccgcg
gcctcgctgccgcccccgccggaggcccccgaggccccgaccatcacggaggtcagccgc
gacggcgctcccatgcaggtcatcaagctcaatgacctgaagcggatgaagatcacggac
ctgtcccgcatggcccacgacgtgggcctcgagaactaccagggcctgaagaagcaggac
ctcatcttcgcgctcctgggtggcatcgcggacaagcgcttcgaggtccacgccgagggc
gtgatggagctgctcagcgacggcttcggctttttgcgcagcgcggacagcgactaccag
cccagcccggacgacatctacgtgtccccgtcgcaggtgcgccgcttcaacctgcggccc
ggcgacacggtgacgggccccatccgccagccccgcgagggcgagcgcttcttcgcgctc
cagaaggtggacaaggtcaacttcacggacccgatgtcggacgcggcgcgcgagcgcatc
ctgttcgacaacctcacgccgctgtatccgacgcgcaagctcaagctggagcacgagtcg
tcggagatgaccacgcgcatcatcgacatgttctgccccatcggcctgggccagcgctgc
ctcatcgtggcgccccccaaggccggcaagacggtgctgctgcagaacatcgcgcacgcc
atcagccgcaaccacccggacgtctacctcatcgtgctgctcgtggacgagcgccccgag
gaggtcacggacatggagcgcagcgtgcgcggcgaggtggtctcctccaccttcgacgag
cccgccacgcgccacgtgcaggtggcggagatggtcatcgacaaggccaagcgcctggtc
gagcagaagtacgacgtctgcatcctgctggactcgatcacgcggctcgcgcgcgcctac
aacacggtggtgcccgcgtccggcaagattctgtccggcggcgtggacgccaacgcgctc
cacaagcccaagcgcttcttcggcgccgcgcgcaacatcgaggagggcggctcgctgacc
atcatcggcaccgcgctcatcgacaccggcagccgcatggacgaggtcatcttcgaggag
ttcaagggcacgggtaactccgaaatcgtcctggaccgcaagctgatggagaagcgcatc
ttccccacgctggacatcaacaagtccggcacgcgcaaggaggaactgctgctggggccc
ggggacctggtccgcatcaccgcgctgcgccaggtgctgcacccgttcacccccatcgac
gcgatggagttcgtgctcaagcacatgcgtccgacggcgacgaacgcggacttcctcggc
tcgatgaaccgctag
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