Myxococcus faecalis: VZP55_22990
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Entry
VZP55_22990 CDS
T11143
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
mfae Myxococcus faecalis
Pathway
mfae02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
mfae00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
VZP55_22990 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mfae03021
]
VZP55_22990 (rpoD)
Transcription machinery [BR:
mfae03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
VZP55_22990 (rpoD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r3
Sigma70_r2
Sigma70_r1_1
Sigma70_r4
Sigma70_ner
Sigma70_r1_2
FH2
Motif
Other DBs
NCBI-ProteinID:
XSF00595
LinkDB
All DBs
Position
complement(5593100..5595226)
Genome browser
AA seq
708 aa
AA seq
DB search
MPTQKPSKASVKPTKKKVDPVIRKKKAPDSPAAKGAGVKAGEEEKEVLEAKEAPAEAVVE
KKKKKGVAAVSEDVDPEEAAEEAAAAVEVDPDAVEDDVEEDPVAERKEVKDLLAQGREKG
FLTYDEVNDALPADIVSSDQIDDVMSMFGDNDIEIVDAQKAAQNNEIKPTVTVEEEKEDV
DEDEKDEDDEPGGKSNDPVRLYLRKMGSVSLLTREGEVEIAKRIEEGEKEVLRALLACKV
AVEEILDIGNKLKTAKLRVRDVIKDAPEEAQSEGAEEAPEEVGEGDAPAQLAQSELNKIE
QICKQIERFRKFAKDCDVLEEELASKKKLTEVRKKELKQEMKDLRTKMMEVLEEMRLNKK
QVDRIVLNLKSLIERVEKAEDELRDLERRYGISMKELRPQLKESRENPNIGKKLQKQLNL
TPEQLEVLDRDVRTAVRKIKKVEEEANLPVDALRRNYDAIRLGEKRAERAKSELVEANLR
LVVSIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYKRGYKFSTYATWWIRQAITRAIAD
QARTIRIPVHMIETINKLIRTSRYLVQEIGREPTPEEIAEKMELPLDKVRKVLKIAKEPI
SLETPIGEEEDSHLGDFIEDKSLVSPADAVINMNLAEQTRKVLATLTPREEKVLRMRFGI
GEKSDHTLEEVGQDFEVTRERIRQIEAKALRKLRHPSRSKRLRSFVES
NT seq
2127 nt
NT seq
+upstream
nt +downstream
nt
atgccgacgcagaagccctcgaaggcgtccgtgaagcccaccaagaagaaggtggatccg
gtgatccgcaagaagaaggctccggacagtcccgcggcgaagggcgctggggtgaaggcg
ggcgaggaggagaaggaagtcctcgaggcgaaggaggcccccgccgaggccgtcgtcgag
aagaagaagaagaagggcgtcgccgccgtctcggaggacgtggaccccgaggaggccgcc
gaggaggccgccgccgccgtcgaggtggacccggacgccgtcgaggacgacgtcgaggag
gaccccgtcgccgagcgcaaggaggtcaaggacctgctcgcccagggccgcgagaagggc
ttcctcacctacgacgaggtgaatgacgcgctgcccgccgacatcgtgtcgtccgatcag
atcgacgacgtgatgagcatgttcggcgacaacgacatcgagatcgtcgacgcgcagaag
gccgcgcagaacaacgagatcaagcccaccgtcaccgtcgaggaggagaaggaagacgtc
gacgaggacgagaaggacgaggacgacgagccgggcggcaagtcgaacgacccggtgcgc
ctgtacctgcgcaagatgggcagcgtcagcctgctcacgcgcgagggcgaggtggagatc
gccaagcgcatcgaggagggcgagaaggaggtcctgcgcgccctgctcgcctgcaaggtc
gccgtcgaggagatcctcgacatcggcaacaagctgaagacggccaagctgcgcgtgcgc
gacgtcatcaaggacgcgcccgaggaggcccagtccgagggggccgaggaggctcccgag
gaggtcggcgagggtgacgccccggcgcagctggcgcagagcgagctcaacaagatcgag
cagatctgcaagcagatcgagcgcttccgcaagttcgccaaggactgcgacgtcctcgag
gaggagctcgcctcgaagaagaagctgaccgaggtgcgcaagaaggagctcaagcaggag
atgaaggacctccggaccaagatgatggaggtcctggaggagatgcggctgaacaagaag
caggtcgaccgcatcgtcctgaatctcaagtcgctcatcgagcgcgtcgagaaggccgag
gacgagctgcgcgacctggagcgccgctacggcatctccatgaaggagcttcgcccgcag
ctgaaggagtcgcgggagaaccccaacatcggcaagaagctgcagaagcagctcaacctc
acgcccgagcagctcgaggtgctggaccgcgacgtgcgcaccgcggtgcggaagatcaag
aaggtcgaggaggaggccaacctccccgtggatgcgctgcgccgcaactacgacgccatc
cgcctgggcgagaagcgcgccgagcgcgccaagagcgagctggtggaggccaacctgcgc
ctcgtcgtctccatcgcgaagaagtacacgaaccgcggcctgcagttcctggacctcatc
caggagggcaacatcggcctgatgaaggccgtggacaagttcgagtacaagcgcggctac
aagttctcgacctacgccacctggtggattcgtcaggccatcacccgcgccatcgcggac
caggcccgcaccatccgcatcccggtgcacatgatcgagaccatcaacaagctcatccgc
accagccgctacctggtgcaggagattggccgcgagccgacgccggaggagatcgcggag
aagatggagctgccgctcgacaaggtccgcaaggtcctcaagatcgccaaggagcccatc
tccctggagacgccgattggcgaggaggaggacagccacctgggcgacttcatcgaggac
aagagcctggtgtcgcccgcggacgcggtcatcaacatgaacctggcggagcagacccgc
aaggtgctcgccacgctgacgccgcgcgaggagaaggttctgcgcatgcgcttcggcatc
ggcgagaagagcgaccacacgctcgaggaggtcggccaggacttcgaggtgacgcgcgag
cgcatccgtcagattgaggccaaggcgctgcgcaagctgcgccacccgagccgctccaag
cgcctgcgctccttcgtggagagctga
DBGET
integrated database retrieval system
