Myxococcus faecalis: VZP55_32920
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Entry
VZP55_32920 CDS
T11143
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
mfae Myxococcus faecalis
Pathway
mfae03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mfae00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
VZP55_32920
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mfae03019
]
VZP55_32920
03009 Ribosome biogenesis [BR:
mfae03009
]
VZP55_32920
Enzymes [BR:
mfae01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
VZP55_32920
Messenger RNA biogenesis [BR:
mfae03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
VZP55_32920
Ribosome biogenesis [BR:
mfae03009
]
Prokaryotic type
rRNA helicases
VZP55_32920
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
WSD
CMS1
Motif
Other DBs
NCBI-ProteinID:
XSF02477
LinkDB
All DBs
Position
8094271..8095992
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AA seq
573 aa
AA seq
DB search
MTSAPPSSPPDATFESLGLKPQLVEALTALGYEEPTPIQNASLPPLLAGKDLLGIAATGT
GKTAAFALPLLHHLVPGEAGPHATSALVLVPTRELAMQVSEAIHRYGQKLGATVLPLYGG
QVIGQQLRVLKRGVDVVVATPGRALDHLRRGTLQLDNVRTVVLDEADEMLDMGFADDLEA
ILSGTPEDRQTALFSATLPPRIASIAERHLRQPVRVRIAKEKVEPGELPRIRQTAYIVPR
AFKIAALGRLLDVESPTAAIIFCRTRTEVDDLTVSLNGRGWRAHALHGGMTQEQRDRVIK
QLKSHGTDLLVATDVAARGLDIPRLSHVVNFDVPNAPEAYVHRIGRTGRAGREGVAITLV
EPREARLVRNIEKVTGQRIQLATVPTVADLRAKRQELLRATLRETLVAGGQDSFRGLVED
LASEYEPLDIAAAAVKLLQDAQDEGRAKEEEDIPAVAPKEDRKERPGRPGAPAGRSGPGR
PERGGPRRGGPAPSWDVTRLWIGAGRQAGMRPADLVGAIAGEAGLDSSQIGAIQIGDGFS
LVEVPEPDANRVIAALKAATIRGRKVIVRKDRG
NT seq
1722 nt
NT seq
+upstream
nt +downstream
nt
gtgacttccgcaccgccgtcctcgccccccgacgccaccttcgaatccctgggcctcaag
ccccagctcgtggaggcgctcaccgccctcggatacgaggagcccacgcccatccagaac
gcctccctgccgccgctgctcgccggcaaggacctgctgggcatcgccgccaccggcacc
ggcaagacggcggccttcgccctcccgctgctgcaccacctggtcccgggcgaggccggc
ccccacgccacctccgcgctggtgctcgtgcccacgcgcgaattggccatgcaggtctcc
gaggccatccaccgctacggccagaagctcggcgccaccgtgctgcccctctacggcggg
caggtcatcggccagcagctgcgcgtgctcaagcggggcgtggacgtcgtcgtcgccacc
ccgggccgcgcgctggaccacctgcgccggggcacgctgcagctcgacaacgtgcgcacc
gtggtgctcgacgaggccgacgagatgctcgacatgggcttcgccgacgacctcgaggcc
atcctgtccggcacgcccgaggaccgccagacggccctcttctccgccaccctgccgccg
cgcatcgccagcatcgccgagcgccacctgcgccagccggtgcgcgtgcgcatcgccaag
gagaaggtggagccgggcgagctgccgcgcatccgccagacggcgtacatcgtcccgcgc
gcgttcaagatcgccgcgctcgggcgcctgctcgacgtggagtcccccaccgccgccatc
atcttctgccgcacgcgcacggaggtggatgacctcaccgtgtcgctcaacggccggggc
tggcgcgcgcacgcgctccacggcggcatgacgcaggagcagcgggacagggtcatcaag
cagctcaagtcccacggcacggacctgctcgtggccacggacgtggcggcgcgcggcctg
gacatcccgcgcctgtcccacgtggtgaacttcgacgtgcccaacgccccggaggcgtac
gtgcaccgcatcggccgcacgggccgcgccggccgcgagggcgtggccatcaccctggtg
gagccgcgcgaggcgcggctcgtgcgcaacatcgagaaggtcaccggccagcgcatccag
ctggccaccgtccccaccgtggccgacctgcgcgccaagcggcaggaactcctgcgcgcc
accctgcgcgagacgctggtggcgggcgggcaggactcgttccgggggctggtggaggac
ctggccagcgagtacgagccgctcgacatcgccgccgccgcggtgaagctgctccaggac
gcccaggacgagggccgcgcgaaggaggaggaggacatccccgccgtcgcgccgaaggag
gaccgcaaggagcgccccgggcgtcccggtgctcccgcgggccgctccggtcctggccgt
cccgagcgcgggggaccgcgccgcggaggcccggcgccctcgtgggacgtcacccgcctg
tggatcggcgcgggtcgtcaggccggcatgcgccccgcggacctggtgggcgccatcgcg
ggcgaggcggggctggactcgtcgcagatcggcgccatccagattggcgacggcttctcg
ctggtggaggtgccggagccggacgccaaccgcgtcatcgccgcgctgaaggcggcgacg
attcgcggccgcaaggtcatcgtccgcaaggaccggggctga
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