Myxococcus faecalis: VZP55_35295
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Entry
VZP55_35295 CDS
T11143
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
mfae Myxococcus faecalis
Pathway
mfae03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
mfae00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
VZP55_35295 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mfae03021
]
VZP55_35295 (rpoB)
03400 DNA repair and recombination proteins [BR:
mfae03400
]
VZP55_35295 (rpoB)
Enzymes [BR:
mfae01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
VZP55_35295 (rpoB)
Transcription machinery [BR:
mfae03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
VZP55_35295 (rpoB)
DNA repair and recombination proteins [BR:
mfae03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
VZP55_35295 (rpoB)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_3
RNA_pol_Rpb2_2
RNA_pol_Rpb2_1
RNA_pol_Rpb2_7
RNA_pol_Rpb2_45
RnfC_N
Motif
Other DBs
NCBI-ProteinID:
XSF02931
LinkDB
All DBs
Position
complement(8772292..8776521)
Genome browser
AA seq
1409 aa
AA seq
DB search
MPTQIQNNFRVRKTFAKIAKIIDIPNLINIQKQSYEKFLQADIAPEKREDIGLQGVFNSV
FPIRDFNETSSLEFVSYHLEKPKYDVDECHQRGMTYSAPIKVVVRLVVWDKDEETGAQSI
RDVKEQEVYFGEIPLMTQNGTFIINGTERVVVSQLHRSPGAFFDHDKGKSHSSGKLLYNA
RIIPYRGSWIDFEFDHKDLLYVRIDRRRKLPATVLIRALGAVSDTAKKNPLEFKGSTEEI
LNYYYATETIYLQSATDFEKSVELELLPGQRATRDIKTKTGELIVKKNRKFTRVAIKKLE
AAKMKTLPIDADELFTKVSAYDVVDENTGEVILECNEEVSQEKVDELLKRNIKEFKVLFI
DNLNVGPYLRETLMLDKLETPEQSIMEIYRRLRPGDPPTPETAINLFTNLFFNPERYDLS
KVGRLKLNFKFGLEEPLDGQILTKRDILEVIRYLIDLKNGKGTIDDIDHLGNRRVRAVGE
LLENQYRIGLVRMERAIKERMSLQEIETLMPHDLINAKPVTAVIKEFFGSSQLSQFMDQT
NPLSEVTHKRRLSALGPGGLTRERAGFEVRDVHPTHYGRICPIETPEGPNIGLIASLSTY
ARVNEFGFVETPYRKVDAGVVTTDVAFYSALEEEKHTIAQANAETDKKGKFVNALVSSRR
GGEFVQARAEDVDLMDVSPNQLVSVAASLIPFLENDDANRALMGSNMQRQAVPLLRTSAP
LVGTGIEAIVARDSGVTCVARRDGTVESVDAGRIVVKADVPASLSDVSSEVDIYNLLKYQ
RSNQNTCLNQKPIISKGDKVRKGDVIADGPATETGELALGQNVVVAFMPWQGYNFEDSIL
ISERILKDDVFTSIHIEEFECIARDTKLGKEEITRDIPNVGEEALKDLDESGIIRIGAEV
KPGDVLVGKITPKGETQLSPEEKLLRAIFGEKAGDVRDSSLRVPPGVVGTVINAKVFSRK
GVEKDERAKQIESMEEAKLLKDQNDEIKVLQDSAIGRIRVLVRGKEVQGKLVDDKGKILL
KKGDILDDALLATVPYKYWGEISVGDPLDSRVRDILRNLEETKEAVKLAFGEKIARIKKG
DELPPGVIKMVKVYVAIKRKLAVGDKMAGRHGNKGVVSRILPEEDMPYLEDGRPVDIVLN
PLGVPSRMNIGQILETHLGWAAKGTGEALQRYVEDNWGADAIKERLKVIYGADTPFAAFL
DKLDEEEIRQLCRRSKRGIHVATPVFDGAQELEIHQLLDEGKLPRTGQMVLFDGRTGEPF
DQNVTVGVMYMLKLHHLVDEKIHARSIGPYSLVTQQPLGGKAQFGGQRLGEMEVWAMEAY
GAAYTLQEFLTVKSDDVVGRTRMYEAIVKGDNVLESGLPESFNVLLKELQSLALDVELLE
SAPPERQRSFGGDFLGGGDGEERKTGTEA
NT seq
4230 nt
NT seq
+upstream
nt +downstream
nt
atgccgacgcagatccagaacaatttccgcgtgcggaagaccttcgcgaagatcgcgaag
atcatcgacattcccaatcttatcaacatccagaagcagtcctacgagaagttcctccag
gccgatatcgccccggagaagcgtgaggacatcggccttcagggtgtcttcaactcggtt
ttcccgattcgggatttcaacgagacgtcgtcgctggagttcgtcagctaccacctggag
aagccgaagtacgacgtcgatgagtgccaccagcgtggcatgacctattccgcccccatc
aaggtcgtcgtccgcctggtggtgtgggacaaggatgaggagaccggcgcgcagtccatc
cgcgacgtgaaggagcaggaggtctacttcggggaaatcccgctgatgacccagaacggc
accttcatcatcaacggcacggagcgcgtggtcgtcagccagctgcaccgcagcccgggc
gcgttcttcgaccacgacaagggcaagagccactcgtcgggcaagctgctctacaacgcc
cgcatcattccctaccgcggttcgtggatcgacttcgagttcgaccacaaggacctgctg
tacgtgcgcatcgaccggcgtcgcaagctgcccgccacggtgctcatccgcgccctgggc
gccgtcagcgacaccgcgaagaagaacccgctggagttcaagggctccaccgaggagatc
ctcaactactactacgccacggagaccatctacctccagagcgcgacggacttcgagaag
agcgtcgagctggagctgctcccgggccagcgcgccacccgcgacatcaagacgaagacg
ggtgagctgatcgtcaagaagaaccgcaagttcacccgcgtcgccatcaagaagctcgag
gcggcgaagatgaagacgctccccatcgacgcggacgagctcttcacgaaggtgtccgcg
tacgacgtggtggacgagaacaccggcgaggtcatcctcgagtgcaacgaggaggtctcg
caggagaaggtggacgagctcctcaagcgcaacatcaaggagttcaaggtcctcttcatc
gacaacctcaacgtgggtccctacctgcgtgagacgctcatgctggacaagctcgagacg
cccgagcagtccatcatggagatctaccgtcgtctgcgtcctggcgatccgccgacgccc
gagacggccatcaacctgttcacgaacctgttcttcaaccccgagcgctacgacctgtcc
aaggtgggtcgcctcaagctgaacttcaagttcggcctcgaggagccgctcgacgggcag
atcctcaccaagcgggacatcctcgaggtgatccgctacctgatcgatctgaagaacggc
aagggcaccatcgacgacatcgaccacctcggcaaccggcgcgttcgcgcggtgggcgag
ctgctcgagaaccagtaccgcatcggtctggttcgcatggagcgggcgatcaaggagcgc
atgagcctccaggagatcgagacgctcatgccgcacgacctcatcaacgccaagcccgtc
acggcggtcatcaaggagttcttcgggtccagccagctgtcgcagttcatggaccagacg
aaccccctgtccgaggtcacgcacaagcgtcgtctgtccgcgctcgggcctggtggcctc
acgcgtgagcgcgctggcttcgaggtccgcgacgttcacccgacgcactacggccgcatc
tgccccatcgagacgccggaaggcccgaacatcggcctcatcgcgtccttgtccacctac
gcgcgcgtcaacgagttcggcttcgtggagacgccgtaccgcaaggtcgacgcgggcgtg
gtgacgacggacgtggccttctactcggcgctcgaggaggagaagcacaccatcgcgcag
gcgaacgcggagacggacaagaagggcaagttcgtcaacgcgctcgtgtccagccgccgc
ggcggtgagttcgtccaggcgcgcgccgaggacgtggacctgatggacgtgtcgccgaac
cagctggtgtcggtggccgcgtcgctcatcccgttcctggagaacgacgacgccaaccgc
gccctcatgggctccaacatgcagcgccaggcggttccgctgctgcgcaccagcgctccg
ctggtgggcacgggcatcgaggccatcgtcgcgcgcgactccggcgtgacgtgtgtcgcg
cgccgtgacggcacggtggagagcgtggacgccggccgcatcgtggtgaaggcggacgtg
ccggcctcgctgagcgacgtgtcgagcgaggtcgacatctacaacctgctcaagtaccag
cgctccaaccagaacacctgcctcaaccagaagcccatcatcagcaagggcgacaaggtc
cggaagggtgacgtcatcgccgacggcccggccaccgagacgggcgagctggcgctgggg
cagaacgtggtcgtcgcgttcatgccgtggcagggctacaacttcgaggactccatcctc
atcagcgagcgcatcctcaaggacgacgtcttcacgtcgatccacatcgaggagttcgag
tgcatcgcgcgcgacaccaagctgggcaaggaggagatcacccgcgacatcccgaacgtg
ggtgaggaggccctcaaggacctggacgagagcggaatcatccgcatcggcgccgaggtg
aagcccggcgacgtgctggtgggcaagatcaccccgaagggcgagacccagctgtctccc
gaagagaagctcctgcgagccatcttcggcgagaaggccggcgacgtgcgcgacagctcc
ctgcgcgtgcccccgggcgtggtgggcaccgtcatcaacgccaaggtgttcagccgcaag
ggcgtggagaaggacgagcgcgccaagcagatcgagtccatggaggaggcgaagctcctc
aaggaccagaacgacgagatcaaggtcctccaggacagcgccatcggccgcatccgcgtg
ctggtccgcggcaaggaggtccagggcaagctcgtggacgacaaggggaagatcctcctg
aagaagggggacatcctcgacgacgcgctgctggccacggtgccctacaagtactggggt
gagatctccgtcggcgacccgctcgactcccgcgtgcgcgacatcctgcgcaacctggag
gagacgaaggaggccgtgaagctggccttcggcgagaagatcgcccgcatcaagaagggc
gacgagctgcctccgggcgtcatcaagatggtgaaggtgtacgtcgccatcaagcgcaag
ctggccgtgggcgacaagatggccggccgccacggaaacaagggcgtcgtgtcccgcatc
ctccccgaggaggacatgccgtacctggaggacggccgtccggtggacatcgtcctcaac
ccgctcggcgttcccagccgcatgaacatcgggcagatcctcgagacgcacctgggctgg
gccgccaagggcaccggcgaggcgctgcagcgctacgtggaggacaactggggcgcggac
gccatcaaggagcgcctcaaggtcatctacggcgcggacaccccgttcgcggcgttcctc
gacaagctggacgaggaggagatccgccagctgtgccgtcgctccaagcgcggcatccac
gtggcgacgccggtgttcgacggcgcccaggagctggagatccaccagctgctcgacgag
ggcaagctgccccgcacgggccagatggtgctcttcgacggccgcacgggtgagccgttc
gaccagaacgtcaccgtgggcgtgatgtacatgctcaagctgcaccacctggtcgacgag
aagatccacgcgcgctccatcgggccctactccctggtcacccagcagccgctgggcggc
aaggcgcagttcggcggtcagcgtctgggcgagatggaagtctgggcgatggaggcctac
ggcgcggcgtacacgctgcaggagttcctcaccgtcaagtcggacgacgtggtgggccgc
acgcgcatgtacgaggccatcgtcaagggcgacaacgtcctggagagcggcctgcccgag
tcgttcaacgtgctcctcaaggagctccagtcgctcgcgctggacgtcgagctgctcgag
agcgcccccccggagcggcagcgcagcttcggcggcgacttcctcggcggcggtgacggc
gaggagcgcaagaccgggaccgaggcctga
DBGET
integrated database retrieval system
