Myxococcus faecalis: VZP55_35405
Help
Entry
VZP55_35405 CDS
T11143
Symbol
hrpB
Name
(GenBank) ATP-dependent helicase HrpB
KO
K03579
ATP-dependent RNA helicase HrpB [EC:
5.6.2.6
]
Organism
mfae Myxococcus faecalis
Brite
KEGG Orthology (KO) [BR:
mfae00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mfae03019
]
VZP55_35405 (hrpB)
Enzymes [BR:
mfae01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
VZP55_35405 (hrpB)
Messenger RNA biogenesis [BR:
mfae03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
VZP55_35405 (hrpB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HrpB_C
Helicase_C
DEAD
HA2_N
Flavi_DEAD
AAA_22
AAA_19
Cas3-like_C_2
AAA_30
Motif
Other DBs
NCBI-ProteinID:
XSF02948
LinkDB
All DBs
Position
8790471..8793035
Genome browser
AA seq
854 aa
AA seq
DB search
MADATLPIDPLLPEIVSTLRGARSLVLEAPPGAGKTTRVPRALLEAGLGAGKEIVVLQPR
RLPTRLAAQRVSEEIGERVGETVGYQVRFEDVRSAKTRMSFVTEGVLGRRLLSDPTLRDV
GIVVLDEFHERHLSADISLAMLRRLQETRRPDLKLVVMSATLEAEPVRAYLGGCPSLRSQ
GRRFDVSVEYLPTPDDRHLDQQVLSGIKRLFTQGVDGDVLVFLPGAGEIRRTRDACAEFA
ERHDTDVLPLHGDLSPAEQDRAVRRSSRRKIILSTNVAETSVTIDGVAVVIDTGLARVAS
HSPWSGLPTLKLSKVSRASAVQRAGRAGRTRAGHCLRLYTQHDFDGRPEQDAPEIRRMDL
AETILSLRASGVTDLNAFPFFEPPPAASLDAAETLLRRLGAVDAKGAVTDVGQRLLRFPV
HPRQARIIVEGERRGVGADAATLAALMGERDIRREARANLGGGQRAAAVVSGPSDLLELL
ERFREAERSNFSSGRLHSLSLEQGAVQSVDRVQKQLRRAVRSQGERPHRPEDVEQALMLS
VLAGYPDRVARRRRPRAPELLLFGGGTASLSELSVVQDADLMVAADAEERPGRGAVVRLA
SAVEPEWLLDLYPETLEEVDTLQWNAEARRVERLTRLSYGNLVLEETRTPAPASEATARV
LVEAALAAGPGRFAEPEALEQWRTRVALLAQAFPEAKFPTVDDTFLRDALASLCSDARSF
KDLEGVSLLDALYARLTSEQQRLLATHAPERVTLPGGRGVKVNYEPGKPPWVESRLQDFF
GMAQGPSVCAGRVPLVLHLLAPNMRAVQVTTDLAGFWERHYPALRKELGRKYPRHSWPED
PRHAQPPAPRPPRR
NT seq
2565 nt
NT seq
+upstream
nt +downstream
nt
atggcggatgccacccttcccatcgacccgctcctgccggagatcgtctccacgctgcgc
ggcgctcgctcgctcgtgctcgaagcacctcccggcgcgggcaagacgacccgagtcccc
cgcgccctgctcgaagccggtctcggcgcgggcaaggagatcgtcgtcctccagccgcgc
cggctgcccacccggctcgccgcccagcgtgtctccgaggagatcggcgagcgcgtggga
gaaactgtcggctaccaggtccgcttcgaggatgtccgcagcgcgaagacgcgcatgtcc
ttcgtcaccgagggcgtcctcggccgacgcctcctctccgaccccaccctccgcgacgtc
ggcatcgtcgtgctcgatgagttccacgagcgccacctgtccgccgacatctccctcgcg
atgctccgccgactccaggagacgcgtcgcccggacctcaagctcgtcgtcatgtccgcg
accctggaggccgaacccgtccgggcatacctcggaggttgtccctcccttcgctcccag
ggacgccgcttcgacgtgagcgtcgaatacctcccgactcccgatgaccggcacctggac
cagcaggtcctctccggcatcaagcgcctgttcacccagggcgtcgacggcgatgtgctc
gtcttcctccccggcgccggagagatccgccgcacccgcgacgcctgcgccgagttcgcc
gaacgccacgacaccgacgtcctccccttgcacggcgacctgtcccccgcggagcaggac
cgcgccgtgcgccggagctcgcgccggaagatcatcctctccaccaacgtggccgagacc
tccgtcaccatcgacggtgtcgccgtggtcatcgacacgggcctcgcgcgcgtggccagc
cactcgccctggtccggactccccacactcaagctttccaaggtcagccgcgcctccgcc
gtccagcgcgcgggccgcgccggccgcacccgcgccgggcactgcctgcgcctctacacc
cagcacgacttcgacggtcgcccggaacaggacgcgccagagatccgccgcatggacctg
gcggagaccatcctgtcccttcgcgcctccggcgtgaccgacctgaacgccttccccttc
ttcgagccacctcccgccgcctcgctcgacgcggcggagacgctgcttcgtcgcctcggc
gcggtggatgccaagggggccgtcaccgacgtgggccagcgcctcctgcgcttccctgtc
cacccgcgccaggcgcgaatcatcgtcgagggcgagcgacgcggggtcggcgccgacgcg
gccaccctcgcggccctcatgggtgagcgagacatccgccgcgaggctcgcgccaacctc
gggggtggccagcgcgccgccgccgtcgtcagtggcccctcggatctgctcgagctcctc
gaacgcttccgcgaagccgagcgctccaacttctcctccggacgcctccactccctctcg
ctcgaacagggcgcggtgcagtccgtggaccgcgtacagaagcagctccgccgcgccgtg
cgaagccagggcgagcgcccacaccgacccgaggacgtggaacaggccctcatgctcagc
gtcctcgcgggctacccggaccgcgtcgcgcgacgccgccgaccccgcgcgcccgagctg
ctgctcttcggcggcggaaccgcgtccctctccgagctgagcgtcgtccaggacgcggac
ctgatggtcgccgcggacgcggaggagcgccccggccgcggcgccgtggtgcgactggcc
agcgccgtggagcccgagtggctgctggacctctacccggagaccctcgaggaggtggac
accctccagtggaacgccgaggcgcgccgtgtggagcgcctcacccgcctgtcctacggc
aacctcgtcctcgaggagacccgaacgcccgcgcccgcctccgaggccaccgcgcgcgtc
ctcgtcgaagccgcgctcgccgccggccccggccgcttcgcggagcccgaggcgctggag
caatggcgcacccgtgtggccctgctcgcccaggccttccccgaggcgaagttccccacc
gtcgacgacaccttcctgcgcgatgcgctcgcgtccctgtgctcggacgcgcgcagcttc
aaggacctggagggcgtctccctgctcgacgcgctctacgcgcgcctcacctcggaacag
cagcgactgctcgccacacacgcccccgagcgcgtcaccctcccgggcggccggggcgtc
aaggtcaactacgagccgggcaagccgccctgggtggagtcacggctccaggacttcttc
gggatggcgcaggggcccagcgtgtgcgcgggccgcgtgccgctggtgctccacctgctc
gcgcccaacatgcgcgccgtgcaggtgacaaccgacctggcgggtttctgggagcgacac
tacccggcgctgcgcaaggagctggggcgcaagtacccgcgccactcgtggccggaggac
cccaggcacgcgcagccgcccgcgccccgtcctccgcgccgctga
DBGET
integrated database retrieval system
