Myxococcus faecalis: VZP55_39675
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Entry
VZP55_39675 CDS
T11143
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
mfae Myxococcus faecalis
Pathway
mfae03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mfae00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
VZP55_39675
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mfae03019
]
VZP55_39675
Enzymes [BR:
mfae01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
VZP55_39675
Messenger RNA biogenesis [BR:
mfae03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
VZP55_39675
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Helicase_C_2
AAA_30
P-loop_SecA
Flavi_DEAD
AAA_22
AAA_19
Motif
Other DBs
NCBI-ProteinID:
XSF03764
LinkDB
All DBs
Position
9861503..9862756
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AA seq
417 aa
AA seq
DB search
MSDSFERLGLSPDTLGALRRVRFTQPTPIQVQAIPPALAGKDVIGCAATGTGKTAAYVLP
LVERFAGRKGTLGLVLAPTRELVRQIAEPLGVFAEARGLTHTVVIGGEDMSAQVEALKAH
PTFVLATPGRLVDLLETGSVSLYRMEGLVLDEADRMLDMGFLPQLERILAALPRKRQTLL
FSATLGPDVGRFARERLHKPVRVEVTRSGTPAERAEQRLYIVKPEEKSALLLTLLAQSDS
TALVFAKSKERADKVLRLLQREGHKSAVLHADRTQNQRRQALEGFREGTYRCLVATDIAA
RGLDVEDVGQVINYDLPHSPEDYVHRIGRTARAQASGVASTFATSRDKHVVAEIERIMRG
QIPRVPVPREDPVFQEAWTRFLASQKDPGPPQKDAAGASPGKEQGRHARTHGKRRPR
NT seq
1254 nt
NT seq
+upstream
nt +downstream
nt
gtgagtgattccttcgaacggctcgggttgtcgccggacacgctcggcgcgctgcgccgg
gtgcgcttcacccagcccacccccatccaggtccaggccatccctcccgcgctcgcgggc
aaggacgtcatcggctgcgcggccacgggcaccggcaagacggccgcctatgtgctcccc
ctcgtcgagcgcttcgcgggccggaagggcacgctggggctggtgctcgcgcccacgcgg
gagttggtgcggcagattgccgagccgctgggcgtcttcgccgaggcgcgcggcctgacg
cacaccgtggtcatcggcggcgaggacatgtccgcgcaggtggaggcgctgaaggcccat
cccaccttcgtgctcgccacgccgggccggctggtggacctgctggagacgggctcggtg
agcctgtaccggatggaggggctggtgctcgacgaggcggaccggatgctcgacatgggc
tttttgccccagttggagcgcatcctcgccgcgctgcctcgcaagcggcagacgctgttg
ttctccgcgacgctcggccccgacgtgggcaggttcgcgcgggagcggctgcacaagccg
gtgcgcgtggaggtgacccgcagcgggactcccgccgagcgggccgagcagcggctctac
atcgtgaagccagaggagaagtcggcgctgctgctcacgttgctcgcgcagagcgactcg
acggcgctcgtcttcgccaagtcgaaggagcgcgcggacaaggtgctgcggctgctccag
cgcgagggccacaagagcgcggtgctgcacgcggaccggacgcagaaccagcggcgccag
gcgctcgagggcttccgcgaggggacctaccggtgcctggtggcgacggacatcgccgcg
cgcggcctggacgtggaggacgtgggacaggtcatcaactacgacctgccgcactcgccc
gaggactacgtgcaccgcatcggccgcacggcgcgcgcgcaggccagtggcgtcgcgtcc
accttcgccacgtcgcgggacaagcacgtggtggcggagatcgaacgcatcatgcgcgga
cagattccccgcgtccccgtgccgcgcgaggaccccgtgttccaggaggcgtggacgcgc
ttcctcgcgtcccagaaggaccccggtcctccgcagaaggacgcggcgggcgcgtccccc
ggcaaggagcagggtcgccacgcccggacccacggcaagcgcaggccccgctga
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