Methanobacterium formicicum BRM9: BRM9_0377
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Entry
BRM9_0377 CDS
T03396
Symbol
cbf5p
Name
(GenBank) H/ACA RNA-protein complex component Cbf5p
KO
K03177
tRNA pseudouridine55 synthase [EC:
5.4.99.25
]
Organism
mfc
Methanobacterium formicicum BRM9
Brite
KEGG Orthology (KO) [BR:
mfc00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
mfc03016
]
BRM9_0377 (cbf5p)
Enzymes [BR:
mfc01000
]
5. Isomerases
5.4 Intramolecular transferases
5.4.99 Transferring other groups
5.4.99.25 tRNA pseudouridine55 synthase
BRM9_0377 (cbf5p)
Transfer RNA biogenesis [BR:
mfc03016
]
Eukaryotic type
tRNA modification factors
Psudouridine synthases
BRM9_0377 (cbf5p)
Prokaryotic type
BRM9_0377 (cbf5p)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TruB_N
TruB_C_2
PUA
DKCLD
Pus10_C
Motif
Other DBs
NCBI-ProteinID:
AIS31204
UniProt:
A0A090I171
LinkDB
All DBs
Position
complement(386906..387868)
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AA seq
320 aa
AA seq
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MAELLQKAYGETDPHYGSIPEERPLEEHLSKGIINLDKPSGPTSHEIDAWVKRILKLDKT
GHGGTLDPRVTGVLPIGLDTATRSIQLLLEAPKEYVCLMRLHEDVGEAKIRDILGEFTGK
IFQTPPMRSAVKRELRVRTIYYVNILEIDGQDALFRIGCEAGTYIRKYCHDIGEALGVGA
HMAELRRTRVGDFQEDDTLKTLQDVTDAYHYWIEDGDEAPLRECVLPMERAASHLKKIVV
RDSAIDAVCHGADLAAGGILQLSEGIKRKDTLAIMTLKGELVAAGEALATTTEIDQADKG
IMVNIKKVFMEPGTYPMMWK
NT seq
963 nt
NT seq
+upstream
nt +downstream
nt
atggcagaactcctccagaaagcctacggggaaacagatccccactacggatcgattccc
gaagaacgaccccttgaggagcacctgtccaagggtatcattaacctggataaaccctcc
ggacccacatcccacgaaatcgatgcctgggtcaaaagaatccttaaactggataaaact
ggtcacggtgggaccctggatcccagggtcaccggtgtgcttcccataggactggacacc
gccacccgatccatacaattactcctggaagcacccaaagaatacgtgtgtctgatgcgc
ctccacgaagatgtgggagaagcaaagatacgggacattctaggagaattcaccggtaaa
atcttccagacaccacccatgcgttcagcagttaaacgggaactccgggtgcggaccatc
tactacgtaaacatcttggagatagatggccaggatgccctgttccgtattggctgtgaa
gccgggacctacatccgtaagtactgccacgatattggtgaagcactgggagtaggagcc
catatggctgaactacgccgaacaagggtgggtgactttcaggaagatgacactctgaaa
acactgcaggatgtcaccgatgcctaccactactggatagaagatggtgacgaagcaccc
ctccgggagtgcgtgctacccatggaaagggcagccagccaccttaaaaagattgtggta
agggattccgccatagacgcagtgtgccacggtgcagacctggccgctggtggaatacta
caactcagtgaaggtataaaacgcaaagataccctggccatcatgaccctcaagggtgaa
ctggtggctgctggtgaggcactggccaccaccacagaaattgaccaggcagataagggc
atcatggtcaacataaaaaaggtttttatggaaccaggaacataccctatgatgtggaag
taa
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