Methanobacterium formicicum BRM9: BRM9_0672
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Entry
BRM9_0672 CDS
T03396
Name
(GenBank) cell division control protein Cdc48
KO
K13525
transitional endoplasmic reticulum ATPase
Organism
mfc
Methanobacterium formicicum BRM9
Pathway
mfc04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
mfc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
BRM9_0672
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mfc03019
]
BRM9_0672
03009 Ribosome biogenesis [BR:
mfc03009
]
BRM9_0672
04131 Membrane trafficking [BR:
mfc04131
]
BRM9_0672
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
mfc04147
]
BRM9_0672
Messenger RNA biogenesis [BR:
mfc03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Ran-mediated transport factors
BRM9_0672
Ribosome biogenesis [BR:
mfc03009
]
Eukaryotic type
Pre-60S particles
Ribosome quality control proteins
BRM9_0672
Membrane trafficking [BR:
mfc04131
]
SNARE
SNARE associated proteins
Others
BRM9_0672
Autophagy
Aggrephagy
Other aggrephagy associated proteins
BRM9_0672
Exosome [BR:
mfc04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
BRM9_0672
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA
AAA_lid_3
CDC48_N
AAA_16
RuvB_N
AAA_2
CDC48_2
AAA_5
AAA_14
AAA_22
TIP49
AAA_lid_PRS2_C
AAA_33
AAA_28
NPHP3_N
nSTAND3
ABC_tran
RNA_helicase
Mg_chelatase
DUF815
AAA_18
AAA_7
IstB_IS21
ATPase
Sigma54_activat
TsaE
AAA_17
Zeta_toxin
AAA_19
Bac_DnaA
Viral_helicase1
AAA_3
AAA_24
NACHT
ATP-synt_ab
DUF5906
Parvo_NS1
SLFN-g3_helicase
NB-ARC
bpMoxR
ORC-CDC6-like
KAP_NTPase
Motif
Other DBs
NCBI-ProteinID:
AIS31493
UniProt:
A0A089ZGY9
LinkDB
All DBs
Position
complement(671325..673610)
Genome browser
AA seq
761 aa
AA seq
DB search
MPDSGEIELRVAEALQQDVGKGMVRIDHELMTKIGAAPGDIVEIIGKRTIGAIAGNSYPA
DVGLEIIRMDGLTRSNAGTSIGEMITIRKTQPRMASKVVIAPAAKGMRIMASGDIIKRNL
MGRAVTRGDVLALVSPRRTKETLREFPGSEDIFREFFEATTPFSLGEIKFTVVSTSPAGL
VRINDSTVVEVRPEAVEVMEKKVPDVTYDDVGGLKKEMSKVREMIELPLRHPEIFDRLGI
DPPKGILLHGAPGTGKTLLAKAVASESGSNFVAINGPEVMSKFVGEAEKKIREIFEEAAE
NAPTVIFIDEIDAIAPKREEVTGEVERRVVAQILALMDGLKERGKVIVIGATNRPDALDP
ALRRPGRFDREIELRVPDRDGRIEILEIHTRAMPLSDDVDINELAETTHGFVGADLAALC
REAAMHALRRVLPDIDLQEQRIDPEILEKLFVTSNDFMDSMKSINPSALREVFIEVPNVH
WEDIGGLDELKESLKEVVEWPLSNISSFQRIGIQPSKGILLFGPPGTGKTMLTKAVATES
QANFISVKGSEILSKWFGESERKIAEIFKKAKQASPCIVFFDEIDAIAPIRGSAAGEPRV
TERMVNTILSEMDGLEELRGVVVIGATNRPDLMDPALLRPGRFDEVVLVPPPDENARKEI
LKVHTGHMSLDEDVKLKELAKKTEGYSGADIEVLCRKAGMIALHEDMNIQKVSYRHFKEA
LKKINPSTTPKTKEYYQQIAQKLGRGLEPKKVREEFPREVA
NT seq
2286 nt
NT seq
+upstream
nt +downstream
nt
ttgccggatagtggtgaaatagaactgagagttgctgaagcactacagcaggatgtaggc
aagggaatggtacggatagatcatgaactgatgactaaaattggtgcagctcccggtgac
attgtggaaataattggtaaacgaaccatcggggccattgccgggaattcttatcctgcc
gatgtgggactggaaataatacgcatggatggattaacccgttccaatgccgggacctcc
attggcgagatgatcaccatccgcaaaacacaacccagaatggccagtaaggtggtcatt
gccccggcagccaagggcatgcgcatcatggcctcgggagacatcatcaaaagaaacctc
atgggtcgggcagtaaccaggggagatgttctggccttggtttctccacgccgaaccaaa
gaaaccctgagggaatttcctggttctgaagacatattccgggaatttttcgaagccacc
acccccttttcactgggtgaaataaaattcacggtggtttcaaccagcccggctggactg
gtacgtatcaacgatagcaccgtggttgaagtccggcccgaggcagtggaggtcatggag
aaaaaggttccggatgttacctacgatgatgtgggtggacttaaaaaggaaatgtccaag
gtccgggaaatgatcgaactccctctacgccaccccgaaatattcgaccgtctgggaata
gaccctcccaagggaatactcctccacggtgcaccaggtaccgggaaaaccctcctggcc
aaggcagtggccagtgaaagcggatccaacttcgtggccatcaacgggccggaagtcatg
agcaaatttgtgggagaagcagaaaaaaagatccgtgaaatattcgaggaagcagctgaa
aatgcccccaccgtgatattcatagatgaaattgacgccattgcccccaagagggaggaa
gtcacgggtgaagttgaacgaagagtggtggcccagatactggccctgatggatggattg
aaagaacggggaaaggtaattgtcattggggccaccaaccggcccgatgccctggaccct
gccctccgcagacccggacgattcgaccgggaaatagaactacgcgtacccgaccgggac
ggtaggattgaaatactggaaatacacactcgtgctatgcccctatctgatgacgtggac
atcaacgagctggctgaaaccacccatggatttgtaggagcggacctggcagcactctgt
cgagaagcagctatgcatgctttaaggagagttttacccgatatagatttgcaggagcag
cgtattgatccggaaattctggaaaaactcttcgtcaccagcaacgattttatggattcc
atgaaatccatcaacccctctgcactaagggaagtgttcattgaagtacccaacgtccac
tgggaagatatagggggactggatgaactcaaggaaagcttaaaggaagtggtggaatgg
cccctgagcaatatctcttccttccagcgcattggaatacaaccctccaagggcatccta
ctcttcggacccccgggaaccgggaaaacaatgctcaccaaggcagtggccacagaatcc
caggctaacttcatctcggttaaggggtcagaaatactgagcaaatggttcggggaatct
gaacggaaaatcgcggaaatattcaaaaaagccaaacaagcctcaccttgtattgtgttc
tttgacgaaattgatgccatagctccaataaggggatctgctgctggtgaaccccgagtc
accgaacgtatggtcaacaccatcctctcggagatggatggcctggaggaactccgggga
gtggtggtaattggagccaccaaccgaccggacctcatggacccggcactcctgcgtccc
gggcggttcgatgaagtggtactggtgccacccccagatgaaaacgctagaaaagaaata
ttaaaggttcacactggacacatgtcactggatgaagatgttaaacttaaagaactggcc
aaaaagacagaaggttattccggggcagatattgaagttctttgtcgtaaggctggtatg
attgcactccatgaagacatgaatattcagaaagtgtcttaccgccatttcaaagaggct
ttgaagaaaattaacccctctaccacccctaaaaccaaggaatactaccagcaaatagcc
cagaaactgggccggggactggaacctaaaaaagttagggaagagttcccccgggaagtg
gcctga
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