Methanobacterium formicicum BRM9: BRM9_1123
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Entry
BRM9_1123 CDS
T03396
Name
(GenBank) RNA-metabolising metallo-beta-lactamase
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
mfc
Methanobacterium formicicum BRM9
Pathway
mfc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mfc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BRM9_1123
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mfc03019
]
BRM9_1123
Messenger RNA biogenesis [BR:
mfc03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
BRM9_1123
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GFIT
Motif
Pfam:
Lactamase_B_2
Lactamase_B
Lactamase_B_3
RMMBL
Anti-Pycsar_Apyc1
Motif
Other DBs
NCBI-ProteinID:
AIS31939
UniProt:
A0A089ZV74
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Position
complement(1139360..1140868)
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AA seq
502 aa
AA seq
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MTSIDFFGGVDEIGGNKIRVNDDKTSFFFDFGMGFSQANDYLSEFLQPRKANGICDFIEL
GLLPYIEGIYREDYLRHVGLPYPSEPSVDGVLISHSHVDHVAYVHHLREDIPIYLTNESH
LILKALEETGAASFSEYLHLKKSFYLEPKKRGDGYMRSRANVVDRDIHVVKPYQKFEIGN
FKIKSAPVDHSLPGATAYIGENEEDTIVYTGDLRFHGRHPELTNKFVKEAKKSNPTIMIS
EGTRIDSQTSVNEFDIEKRAVESVNRCQGLVVVNYPVRDLDRLLTFYKVAEDTDRKLVVS
LKQAYILNLFQEHQQEYPGIGEVMIYKPRKGWGLVGDNSFACVDDEWLCASTIDEDIESA
HSLRDYKKWERKLLENDNVLTYHDLQENPRDYIFRCDFFELKELIDIKPENGIYIKSSTE
PFDDQMEINERKVRNWLKLFNLPLLNKCFHASGHANGLEILEMIREIHPDKLYPVHTTHK
EKFLELADDGIEVIFPKKQEII
NT seq
1509 nt
NT seq
+upstream
nt +downstream
nt
ttgaccagtattgattttttcggaggcgtggatgaaattggggggaataaaatcagggtt
aatgatgataagacatcattcttctttgattttggaatgggattttcccaggccaatgat
tatttgtcggagttcctgcaaccccgcaaggccaatggaatctgtgactttatcgagctg
ggcctgttaccctacattgaaggaatttatcgtgaagactacctgcggcatgtgggtctg
ccctacccatctgaaccatcggttgatggagtgctgattagccattcccacgtggaccac
gtggcctatgtacatcatctccgggaagatattcccatctacctcaccaatgaatcacac
ctgattttaaaggcactggaagaaactggtgctgcatccttctcagaatatctccattta
aaaaaatccttttacctggagcccaaaaagcgtggagacggttacatgcgctcccgggcc
aacgtagttgaccgggacatccacgtagtgaaaccctaccaaaaatttgaaatcgggaat
ttcaagattaaatctgccccggttgaccattcactacccggcgcaacggcatatattggt
gaaaatgaggaggacaccattgtatacactggagacctccgtttccatggaaggcacccg
gaactcaccaataaattcgttaaagaagctaaaaaatccaatcccactattatgatcagt
gaagggactcgaattgacagccaaaccagtgtaaatgagtttgacattgaaaaacgggca
gtggaatccgttaatcggtgccaaggcctggtagttgttaattatcctgtgcgggatctg
gaccggcttttaaccttctacaaagtggccgaggacactgaccgaaaattggtggtgagc
cttaaacaggcctatattctgaacctattccaggaacaccaacaggagtatccgggtata
ggggaggttatgatctacaaaccccgtaaaggatggggtctggtgggggataatagtttt
gcctgtgtggatgatgaatggctgtgtgcctccaccattgatgaggacattgaatctgca
cattctctccgggattataaaaagtgggaaagaaaactactggaaaatgacaacgttctc
acctatcatgatctacaggaaaatccacgggattacatatttcgctgtgatttttttgag
ttaaaggaacttattgatataaaacccgagaatggtatctacatcaagtccagtacagaa
ccctttgatgatcagatggaaataaatgaaaggaaggtgcgtaattggttgaagttattc
aacttgcccctcttaaataaatgcttccatgcatctgggcacgccaacggcctggagata
ctggaaatgattagggagatacatcctgataagttatatccggtacacactacccacaag
gagaaattcctcgaacttgccgatgatgggatcgaggttatttttcccaaaaaacaggaa
atcatatga
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