Methanobacterium formicicum BRM9: BRM9_1276
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Entry
BRM9_1276 CDS
T03396
Symbol
ligT
Name
(GenBank) 2'-5' RNA ligase LigT
KO
K01975
RNA 2',3'-cyclic 3'-phosphodiesterase [EC:
3.1.4.58
]
Organism
mfc
Methanobacterium formicicum BRM9
Brite
KEGG Orthology (KO) [BR:
mfc00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
mfc03016
]
BRM9_1276 (ligT)
Enzymes [BR:
mfc01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.4 Phosphoric-diester hydrolases
3.1.4.58 RNA 2',3'-cyclic 3'-phosphodiesterase
BRM9_1276 (ligT)
Transfer RNA biogenesis [BR:
mfc03016
]
Prokaryotic type
tRNA spricing factors
Other tRNA splicing factors
BRM9_1276 (ligT)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigT_PEase
2_5_RNA_ligase2
AKAP7_NLS
Motif
Other DBs
NCBI-ProteinID:
AIS32091
UniProt:
A0A090I4R3
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All DBs
Position
1305840..1306388
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AA seq
182 aa
AA seq
DB search
MRAFLAVDVDSTLNYEIQKVQKELKKTAAPLKMVEPENLHFTFKFFGEISPTQTENIIQI
TQDKLEKYKSFPLNIKGTGVFPSMGYMRVIWLGVEEPEQFSQLQRDLDQEFVKMGFKKER
SYIPHLTIARVKGPRNKEILAETVQKLESIEIGQMTLEKIVLKKSELTPVGPIYTDIQQF
FI
NT seq
549 nt
NT seq
+upstream
nt +downstream
nt
atgcgagcatttttagcagttgacgtggacagcactttaaattatgaaattcagaaagta
cagaaggaactaaaaaaaactgccgccccattgaagatggtggagccggagaacctgcat
ttcaccttcaaattttttggagaaatctcccctacccagactgaaaacataatccagata
acccaggacaaactggaaaagtacaaatcctttcccctgaatattaaggggacgggagta
ttccccagcatgggatatatgagggttatctggctgggagttgaagaaccagagcagttc
tcccagctgcaacgggatcttgaccaggaatttgtcaagatgggatttaaaaaggaacgc
agctacataccccacctaaccattgcccgggtgaagggaccacggaacaaggaaattctg
gccgaaaccgtgcaaaaattggagtcaatcgagattgggcagatgaccctggagaagatt
gttttgaaaaaaagcgaactaaccccggtgggtcctatttataccgatatccaacaattt
ttcatttaa
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