Methanobacterium formicicum BRM9: BRM9_1736
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Entry
BRM9_1736 CDS
T03396
Name
(GenBank) exosome complex exonuclease Rrp41
KO
K11600
exosome complex component RRP41
Organism
mfc
Methanobacterium formicicum BRM9
Pathway
mfc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mfc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BRM9_1736
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mfc03019
]
BRM9_1736
Messenger RNA biogenesis [BR:
mfc03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
BRM9_1736
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Cofactors
BRM9_1736
BRITE hierarchy
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Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
Motif
Other DBs
NCBI-ProteinID:
AIS32546
UniProt:
A0A090I5G4
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All DBs
Position
complement(1779770..1780522)
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AA seq
250 aa
AA seq
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MIIILTSKSIGDSNKGSLVASDTKKRPDGRAFDELRPLKIEAGVLERADGSAYVEIGDNK
VLAAVYGPRELHVRRLLKPNMAILRCRYNMAPFSVEDRKRPGPDRRSVEISKITAEALNP
AVFLEKFPRSTIDIFIEVLQAEGGTRCAGITAASVALADAGIPMRDMVAACAAGKADGQV
VMDLSEWEDKEGEADLPIAMMPRTGDITLLQMDGHLTSDEFEQALDLAIEGCKIISEAQK
EAIKNRYGGD
NT seq
753 nt
NT seq
+upstream
nt +downstream
nt
gtgattattattctaaccagcaaatcaattggagatagtaacaaaggaagtttagtagct
tctgatactaaaaaaaggcccgatgggagagcctttgatgaactgaggcctttgaaaata
gaggccggtgtactggaaagagctgatggatcagcctatgtggaaattggcgataacaaa
gtattagccgcagtctacggtccacgagaattacacgtccgccgactgttaaaacccaac
atggccatactgcgttgccgttacaacatggcccccttctcagtggaagaccgtaaaaga
cccgggcccgaccgcagatcagtggaaatatccaagatcactgccgaagcacttaaccct
gcagtcttcctggaaaaattccccagatccaccattgacatattcatagaagttctgcag
gcagaaggaggcacaaggtgtgccggtatcactgcagcatcagtggccctggccgatgcc
ggtatccccatgagggacatggtagccgcctgtgccgcaggtaaagccgacggccaggta
gtaatggatctctcagaatgggaagataaggaaggagaagcagatctgcccatagccatg
atgccccgtaccggggacataaccctgctacagatggatggacacctgacctctgatgag
tttgaacaggcactggatctggccattgaaggatgtaaaatcatcagtgaagcacagaaa
gaggccataaagaacaggtacggtggtgattaa
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