Methanobacterium formicicum BRM9: BRM9_1770
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Entry
BRM9_1770 CDS
T03396
Name
(GenBank) DEAD/DEAH box helicase domain-containing protein
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
mfc
Methanobacterium formicicum BRM9
Pathway
mfc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mfc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BRM9_1770
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mfc03019
]
BRM9_1770
03009 Ribosome biogenesis [BR:
mfc03009
]
BRM9_1770
Enzymes [BR:
mfc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
BRM9_1770
Messenger RNA biogenesis [BR:
mfc03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
BRM9_1770
Ribosome biogenesis [BR:
mfc03009
]
Prokaryotic type
rRNA helicases
BRM9_1770
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
DeaD_dimer
ResIII
CMS1
Cas3-like_C_2
Utp25_C
UVR
Motif
Other DBs
NCBI-ProteinID:
AIS32580
UniProt:
A0A090I564
LinkDB
All DBs
Position
complement(1810297..1811877)
Genome browser
AA seq
526 aa
AA seq
DB search
MESLLFEDLELSREMKRAIADMGFEEATPIQSLVLPYVLDGKDVIGQSQTGTGKTAAFGI
PLLEKLDPTVRGVQAVILCPTRELAIQVAEEIRKLSKYKKTNVLPVYGGQPIERQIKALK
RGVQIIIGTPGRVMDHIHRRTLKMDQVKTIILDEADEMLDMGFRDDIEFVLEQIPEERQM
LLFSATMSPVILGLTRKYQNKPKMLKVAHQELTVPEIEQIYFEVKEQMKLDLLTRLIDMN
NLKLTLVFCNTKRRVDRLVNHLQTRGYFADGLHGDMSQNQRDRVMNKFRKGQIEILVATD
VAARGIDVDDVEAVFNYDVPNNEEYYVHRIGRTGRAGKKGQAFTFVSGKEIYQLRDIQRY
TKVRIEQQKIPSLREVEEVKRDLFLERLRKEIDNGDLDQEIHLIERLMEEDYSSVDIAAA
LLKLYVGRKDDSSQKDSKYEDTGAQPGMVRFFINVGRKQKVKAKDIVRAIGDVSGLSSTS
IGRIDVLDKFSFVELPQNQAREVVGALQRKGIKGLRVNMEPANKKM
NT seq
1581 nt
NT seq
+upstream
nt +downstream
nt
atggaaagtttattatttgaagatttggaattatcccgtgaaatgaaacgagcaattgca
gatatgggttttgaagaggcaacacctatacaatcactggttttaccctatgtattagat
ggtaaagatgttattggccagtcccaaacaggtactggtaaaaccgctgcctttggaata
ccccttctggaaaaactggaccccactgttcggggagtgcaggcagttatactctgcccc
accagagaactggccatccaagtggccgaagaaattagaaagttatctaaatacaaaaaa
accaatgtcctaccagtttacgggggacaacccattgaacggcaaattaaagccctgaaa
aggggagtgcagatcatcattggaactcccggacgggtgatggatcatattcaccgtaga
acacttaagatggaccaggtgaagaccatcatcctggatgaagctgatgaaatgctggac
atgggattcagggatgatatagaatttgtcttagaacagatacctgaagaaaggcaaatg
ttactattttccgcaactatgtctccagtaatcctgggactaaccagaaaataccagaac
aagcctaaaatgcttaaagtagcccatcaggaactcaccgtccctgaaattgaacagatc
tactttgaagttaaagaacagatgaaactggatctgttgaccaggcttatagacatgaac
aaccttaaactcaccctggtgttctgtaacaccaaaagaagagtggatcgcctggtaaac
caccttcaaaccagaggatacttcgctgatggactgcacggggacatgagtcagaaccag
cgggacagggtcatgaacaagttccggaaaggtcagatcgagatactggtggctacggat
gtggccgcccggggaattgatgtggatgatgtggaggcagttttcaactacgatgtacct
aacaacgaggagtactacgtacaccgaataggtagaactggccgtgccggtaaaaaagga
caggccttcacctttgtatctggaaaggaaatctaccagttaagggatatccagcgttac
accaaggtccgtattgaacaacagaaaatcccttccctaagagaggtggaagaagttaaa
agggacctgttcctggaaagactccggaaggaaatagataacggagatctggatcaggag
atccatctcatcgaaagattgatggaagaggattacagctccgtggatattgctgcagcc
ctcctcaaattatacgtgggtagaaaggatgattccagtcagaaggattctaaatatgag
gatactggagcacaacccggaatggtaagattcttcattaacgtgggtcgcaaacagaaa
gtgaaagcaaaagacatagtacgagctataggagatgtgtctggactttcctcaaccagt
attggccgtattgatgtgcttgataaattttcctttgttgaacttccacagaatcaagcc
cgtgaagtggtcggtgctctgcagaggaagggaataaaaggactccgggtaaatatggaa
cccgctaataagaagatgtaa
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