Methanobacterium formicicum BRM9: BRM9_1992
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Entry
BRM9_1992 CDS
T03396
Name
(GenBank) cell division control protein Cdc48
KO
K13525
transitional endoplasmic reticulum ATPase
Organism
mfc
Methanobacterium formicicum BRM9
Pathway
mfc04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
mfc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
BRM9_1992
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mfc03019
]
BRM9_1992
03009 Ribosome biogenesis [BR:
mfc03009
]
BRM9_1992
04131 Membrane trafficking [BR:
mfc04131
]
BRM9_1992
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
mfc04147
]
BRM9_1992
Messenger RNA biogenesis [BR:
mfc03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Ran-mediated transport factors
BRM9_1992
Ribosome biogenesis [BR:
mfc03009
]
Eukaryotic type
Pre-60S particles
Ribosome quality control proteins
BRM9_1992
Membrane trafficking [BR:
mfc04131
]
SNARE
SNARE associated proteins
Others
BRM9_1992
Autophagy
Aggrephagy
Other aggrephagy associated proteins
BRM9_1992
Exosome [BR:
mfc04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
BRM9_1992
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA
AAA_lid_3
CDC48_N
AAA_2
AAA_16
RuvB_N
TIP49
AAA_14
AAA_5
AAA_22
CDC48_2
AAA_33
nSTAND3
AAA_28
RNA_helicase
AAA_3
Sigma54_activat
NPHP3_N
Mg_chelatase
AAA_24
AAA_7
IstB_IS21
ABC_tran
Zeta_toxin
Parvo_NS1
ATPase
NB-ARC
SLFN-g3_helicase
AAA_11
PhoH
AAA_18
ATPase_2
Bac_DnaA
ATP-synt_ab
DUF815
AAA_lid_PRS2_C
AAA_19
Vps4_C
Motif
Other DBs
NCBI-ProteinID:
AIS32796
UniProt:
A0A089ZDA2
LinkDB
All DBs
Position
complement(2044018..2046198)
Genome browser
AA seq
726 aa
AA seq
DB search
MKLKVAEAFSQADVGRSIARIDPACMGKLDLLDGDMIEIEGRKLTATTVASSQSDIGLGI
IRIDGYIRKNAGTSLGEEVTVRKAEVKEAQKVVLAPVDQKVMIRGDVRGAFRGRVLSKGD
IIVTGIRQQQSTMRGSLFDEFFRDTMSDVSPMGELKLAVVTTKPAGTVKITEMTDVEVQT
EPVDVSKLEGVKTLVDVTYEDIGGLKEEVKKVREMIEIPLKRPELFERLGISPPKGVLMH
GPPGTGKTLLAKAVANESDAHFIAIQGPEIMSKYVGGSEEKLREFFEEAEENAPSIVFID
EIDAIAPKREEVSGETERRVVAQLLTLMDGLKSRGQVVVIGATNRPDALDPALRRGGRFD
REIEIGVPDKDGRQEVLQIHTRGMPLDDKVDLDEIADTTHGFVGADLEMLCKEAAMRVLR
RVLPDIKADEEIPPETLKKMIIKKSDFKEALKEIQPSALREVLVQVPDIKWEDIGGLENA
KQELREAVEWPLKYPESFDKFGVTPPKGVLIYGPPGTGKTLLAKAVANESQANFIAVKGP
ELLSKWVGESEKGVREVFRKARQTAPTVIFFDEIDSIASARSGSSTDSGVTQRVVNQLLT
EIDGLEELQDVAVIAATNRVDIMDPALLRPGRFDRHVKVDDPDEKARLEIFKVHTKDMPL
ADDVDLDYLAKNTAKYVGADIEAVCREAVMLTLREDLKAEKVNMEAFKKAMKKVKTEEKV
DMVQYH
NT seq
2181 nt
NT seq
+upstream
nt +downstream
nt
atgaaattgaaagtagcagaagccttttcacaggcagacgttggtagatcaattgctcgt
atagacccggcatgcatgggaaagctcgatcttctcgacggagacatgattgaaattgaa
ggtcgaaagctcactgccaccactgtggcctcctcccaatctgacattgggttgggcatt
ataaggatcgatgggtacatccgaaaaaatgccggaacatccctgggagaagaagtcacg
gtacgaaaggcagaagttaaagaagcacagaaagtggtgctggccccggtggatcaaaaa
gtcatgatccggggcgatgtaagaggagccttccgtggccgagtgctatctaaaggagac
atcattgtaacgggaatccgacaacaacagagcaccatgcggggaagcctgtttgatgag
ttcttccgtgataccatgtctgatgtcagccccatgggagaactgaaactggcagtggta
accaccaaaccagccggaaccgttaagatcacagaaatgactgatgttgaagttcaaacc
gaaccagtggacgtgtccaaactggaaggagtgaaaaccctggtagatgtcacctacgaa
gacataggtggccttaaggaagaagtgaagaaagtcagggaaatgattgaaatacccctg
aaacgaccggaactcttcgaaagactgggaatatcaccacccaaaggagttttaatgcat
ggaccgccaggtacgggtaaaaccctgctggccaaggccgtggctaacgaaagtgacgcc
cacttcattgccatacagggtccggagatcatgagcaaatacgtgggtggatccgaagaa
aaattacgggaattcttcgaagaagcagaagaaaacgccccatccattgtattcatagat
gaaatagatgccatagctcccaaaagggaagaagtctccggagaaacagaacgacgtgtg
gttgcccagctactaactttaatggatggacttaaaagtagaggccaagtggtggtaata
ggtgccactaaccgaccggatgctctggatcctgccctgcgccgtggtggaagatttgac
cgggaaatagaaataggagtaccagacaaggacggacgccaggaagtccttcagatacac
acccggggaatgcccctggatgacaaggtggatcttgatgaaatagccgacactacccat
ggtttcgtgggagcagacctggaaatgctctgtaaagaagcagcaatgagggttctacgt
agagtactgccggatatcaaagccgatgaggaaatacccccagaaacccttaaaaagatg
atcatcaagaaatcagacttcaaagaagctttaaaagaaatccagccatctgcgctccgc
gaagtcctggtacaggtgcctgatattaaatgggaggatattggtggcctggaaaacgcc
aaacaggaactaagggaagcagtggaatggcctttaaagtatccggaaagtttcgacaaa
ttcggagtcacaccacccaaaggtgtactgatatacggaccaccaggtactggtaaaacc
ttactggccaaggctgtggccaacgaaagtcaggccaacttcatagcagtcaaaggacca
gaattactctccaaatgggtgggagaatcagaaaaaggtgtaagggaagtattccgcaag
gccaggcaaactgcacccaccgtcatattcttcgacgaaatagacagcatagcctcagcc
cggtctggctccagcactgacagtggagtcacccagagggtggtaaaccagttactcaca
gaaatcgatggattagaagagttacaggacgtggcagtcatcgccgccaccaaccgggtg
gacatcatggacccggcactacttcggccaggccgatttgaccggcacgtaaaggtggat
gaccctgatgagaaggcccgactggaaatattcaaagtacacaccaaggacatgcccctg
gctgatgatgtggacctggattacctggctaaaaacactgcaaaatacgtcggtgcagat
attgaagcagtctgccgggaagcagtcatgttaaccctcagggaagaccttaaggccgaa
aaagtcaatatggaagccttcaaaaaggccatgaaaaaggtcaaaaccgaggaaaaggtg
gacatggtgcagtaccactaa
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