Methanobacterium formicicum BRM9: BRM9_2269
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Entry
BRM9_2269 CDS
T03396
Name
(GenBank) exosome complex RNA-binding protein Csl4
KO
K07573
exosome complex component CSL4
Organism
mfc
Methanobacterium formicicum BRM9
Pathway
mfc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mfc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BRM9_2269
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mfc03019
]
BRM9_2269
Messenger RNA biogenesis [BR:
mfc03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
BRM9_2269
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Core exosome
BRM9_2269
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ECR1_N
EXOSC1
RRP4_S1
HypA
DmmA-like_C
Zn_Tnp_IS91
Zn_ribbon_PaaD
Rho_RNA_bind
zf-C2HC_2
Zn_ribbon_TiaS
OB_MEIOB_N
Zn_ribbon_8
DZR_2
Zn_ribbon_3
C1_1
DUF7129
Zn_ribbon_9
Phage_zn_bind_2
DUF7575
Motif
Other DBs
NCBI-ProteinID:
AIS33069
UniProt:
A0A090I640
LinkDB
All DBs
Position
complement(2309568..2310137)
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AA seq
189 aa
AA seq
DB search
MKAKNGDFVLPGDPLGVTEEFLPSEWTYDDHGEIRSLVAGTVTIDQKNKKIAIIPKTKSP
AILKKGDVVLGQIREVRGQRALVDVDGIKDSKRSLPITFLGAIHISQARKGYVDKLTDDF
HIGDIIQARVTKVMGVDNADLTTAESELGVLKAMCTNCRHFMKQIGKKEVKCPNCGRKET
RNISSNYEG
NT seq
570 nt
NT seq
+upstream
nt +downstream
nt
atgaaggcaaaaaacggagatttcgttcttcccggcgaccctttaggtgtcactgaggag
tttctcccgtcagaatggacctatgatgaccatggtgaaatcaggtccctggtggcggga
acagtaaccatagaccagaaaaacaaaaaaatagctataattcccaaaacaaaatcccct
gcaattcttaaaaaaggggacgtagttttaggacagataagagaagttcgagggcaaaga
gcgttagtagatgtggatggaataaaagacagtaaaagaagtctgcccatcactttcctc
ggcgccatacacatctcccaggccagaaagggatacgtggataaactgactgatgatttc
catattggggacattatacaggcccgggtcaccaaggtcatgggagtggataacgctgat
ttaaccactgctgaaagtgaactcggcgttttaaaggctatgtgcactaactgccgacat
ttcatgaaacagataggtaaaaaagaagtaaaatgtcctaactgtggtagaaaggagacc
agaaacatctcttctaattatgagggatag
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