Mycoplasmoides fastidiosum: NPA10_03235
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Entry
NPA10_03235 CDS
T08471
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
mfd
Mycoplasmoides fastidiosum
Pathway
mfd03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
mfd00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
NPA10_03235 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mfd03021
]
NPA10_03235 (rpoC)
03400 DNA repair and recombination proteins [BR:
mfd03400
]
NPA10_03235 (rpoC)
Enzymes [BR:
mfd01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
NPA10_03235 (rpoC)
Transcription machinery [BR:
mfd03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
NPA10_03235 (rpoC)
DNA repair and recombination proteins [BR:
mfd03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
NPA10_03235 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Peptidase_M23
Motif
Other DBs
NCBI-ProteinID:
UUD38149
LinkDB
All DBs
Position
complement(915924..919844)
Genome browser
AA seq
1306 aa
AA seq
DB search
MQNRLDQLQKEEAALNQEDSRIHAIQIGLASAEMIRSWSRGEITKPETINYKSLKPERGG
LFDEVIFGPTKDYECACGKYKKVRYRGKKCERCGVEITESIVRRERMGHINLACPVTHTW
MIKELPLPSKISLVLGMTYKQIEEVVYFQNHIVLDPGHISFENEKNNFSLNEVLNLADFK
QSMPTRAKIRRLIKQICTNILAANNNNEDHSDYMQGMLFYKNLQQSNLPFSVEQMFKFLY
KHSGLRVGIGAEAIEELLRNINLIKVEKELEEQLLKDDYINYTDNKTKTLLRRLSVIRWL
INSGNKPEWMVLRAIPVIPPDLRPIIQLEGGRFTTSDINTFYRRIIIRNQRLKRVLALNA
ASVIINNEKRMLQEAVDSLIDNNARKKPLVTKDKHPLKSLTEHLKGKQGLFRQNLLGKRV
DYSARSVIVGGPELKMYEVGLPILIVLKLFKPFIIRELIRNVDENGNDIKPIVNSIRAAE
KMILRQDQEIWPIVHRVIKERPVLLNRAPTLHRLGIQAFEPRLIEGKAIQLHPLVTPAFN
ADFDGDQMAVHMPISEEAIAEARSILLAPWHILGPKDGKPVITPTQDMILGIYYLTGESK
EALGTGSFFATIDEAVAAYEMRRIHLHAIIAIPTAEMPNKSFPHQGILITTVGKLILNRV
LPDGFVYLNQTLPNAIDSTDIVTTGGNIQKAIQTKQIQPAFNKNALSRLISAIYNQYPSK
TIPVVLDHIKNLGFEYSTKSSTTVSAFDVPYYQEKYALFEKADEEVAKQKYYYSKGLLTN
DERYRATIKIWNDVKDEVSKGIRQVMNSQTQKDNPIMVMAESGARGNVSNFTQLSGMRGL
MNKSYNYNQKTKSAVTHDIIEVPIKHSFIEGLTVLEYFNSSYGARKGMTDVAMKTAETGY
MTRKLVDATQEVIVREHDCGTRKGLILEDIIDTRLASPIEMLEERMLHRFSNNDVYDPKT
KELIVARNQIIDETVAAKIVKAGYNTVEVRSILACQLKQGICQMCFGNDLTTREPIAIGT
AIGVIAAQSVGEPGTQLTMRTFHSGGVSGEANIVQGFERLKQLFNMIAPKEWETAVISQL
NGVVESIENKTWEGSKISQVYITIRNKIDYRVYIVNINASLRVKVGQEIKVGDKITEGSI
DVKELLKIAGIDAVRNYMIKEVQKVYRLQGIEIADKYVEVIIRQLTSKVQIQSPNDSSWF
IHEIVDVNLFREECTRLLLNGKNPPTAINIVFGLEQAPANTNSFLSAASFQDTKKILTDA
AVKGQIDYLHSLKENVIMGNLIPAGTGLKTPQEVIKRAKELGKFDY
NT seq
3921 nt
NT seq
+upstream
nt +downstream
nt
atgcaaaaccgtttagaccagttgcaaaaagaagaagcagctttaaaccaggaagattct
cgcattcacgcgattcaaattgggttagcttctgcagagatgattcggtcttgatcccgg
ggagaaattactaaacccgaaacaattaactacaaatccttaaaacccgaacggggcgga
ttatttgatgaagtgatttttggtcccaccaaagactatgaatgtgcttgtggaaaatat
aaaaaagtccgttatcgcgggaaaaaatgtgaacgttgtggggttgaaattactgaatca
attgtacggcgggaacgaatgggtcatattaatttagcttgtccagttacccacacttgg
atgattaaggaattaccgttaccatctaaaatttcattagtcttagggatgacttataag
caaattgaagaagttgtttacttccaaaaccacattgtgcttgatccgggtcacattagt
tttgaaaacgaaaaaaataatttcagtttaaacgaagttttaaacttagccgacttcaaa
caatccatgccaactcgggcgaaaattcgtcggttaattaaacaaatttgcaccaacatt
ttagcagccaataacaataatgaagatcatagtgattacatgcaaggaatgttattttac
aaaaacttgcaacaatccaatctgccgtttagtgtcgaacaaatgtttaagtttttatac
aaacattctggtttacgtgtgggcattggggctgaagcgattgaagaattattacgcaac
atcaatttaatcaaagttgaaaaagaactagaagagcaactgttaaaagacgattacatt
aactacaccgataataaaactaaaactttattacgacggttatcagtgatccgctggtta
attaactcaggtaataaacccgagtgaatggttctacgcgctattccagtgattccccca
gatttacgcccgatcatccagctagaaggagggcggttcacaacaagtgatattaacacc
ttctaccggcgaattatcattcgtaaccagcgtttaaaacgggtgttggctttaaatgcg
gcatcagttattattaacaatgaaaaacggatgttacaagaagcagttgactccttaatt
gataataatgcgcggaaaaaaccattagtaactaaagacaaacacccgttaaaatcttta
accgaacacctaaagggtaaacaagggttattccgtcaaaacctgttaggaaaacgggtt
gactattccgcacgaagcgtaattgtgggtggaccagaactgaaaatgtatgaagtgggt
ctaccaattttaattgttttaaaattgtttaaaccgttcatcattcgcgaactaattcgt
aatgttgatgaaaacggcaacgacattaaaccaattgttaattccattcgagctgctgag
aaaatgatcttgcgtcaagaccaagaaatttgaccaattgttcaccgggtaattaaagaa
cgtcctgttttattaaaccgcgccccaactttacaccggttaggcattcaggcgtttgaa
ccccggttaattgaaggaaaagcgattcagttacacccgttagttaccccagcgtttaat
gctgactttgacggggaccaaatggcggtgcacatgccaatctctgaagaagcgattgct
gaagcccgcagtattttattggcaccatgacacattttagggcccaaagatggtaaaccc
gtgatcactccaacccaggacatgatcttaggaatttattatttaacaggtgaatccaaa
gaagctttaggaacaggatcattctttgctacgattgatgaagctgtagccgcatacgaa
atgcgccgcattcatttacacgccatcattgccattccgactgcagaaatgcctaataaa
agcttcccccaccagggaattttaattaccacggttgggaaactaattttaaaccgggtg
ctacctgatggatttgtttatttaaaccaaaccctacccaacgcgattgattcaaccgac
attgtcaccacgggggggaatattcaaaaagcgatccaaaccaaacaaattcaacccgct
tttaacaaaaatgcgttatcccggttgatctctgcaatttacaaccagtatccatctaaa
acaattccagtcgttttagaccacattaaaaacttagggtttgaatattccaccaaatca
tcaaccacagtttccgcgtttgatgtgccttattaccaagaaaaatacgcgttatttgaa
aaagcggatgaagaagtagctaaacaaaaatactactattccaaagggttattaactaat
gacgaacgctaccgagcaaccattaaaatctggaacgatgttaaagatgaagtgtctaaa
gggattcgtcaggtgatgaattcccaaactcaaaaagataacccaattatggtgatggcc
gaatctggagcacgggggaacgtatccaactttacccagttatccgggatgcgggggtta
atgaacaaatcctataactataaccaaaaaaccaaatccgcagttacccacgatattatt
gaagtaccgattaaacactccttcattgaaggactaaccgtgcttgaatatttcaactcc
tcttatggggcacgaaaagggatgactgatgtggcgatgaaaaccgctgaaaccgggtat
atgactcgcaaactggttgatgctacccaagaagtcattgtgcgtgaacacgattgtgga
acccgtaagggtttaattctagaagacatcattgacacccggttggcttcaccaattgaa
atgttagaagaacgaatgttacaccgtttttctaataatgatgtttatgatccgaaaact
aaagaattaattgtagcgcgtaaccaaatcattgatgaaaccgtggccgctaaaattgtt
aaagccggttataatacggttgaagttcgctccattttagcgtgtcagctaaaacaggga
atttgccaaatgtgttttgggaatgatttaactacgcgtgaaccaattgcgatcggcact
gccatcggggttattgcggcccaatcagttggtgaaccagggacccagctaaccatgcgg
accttccactctggaggggtttcgggcgaagctaacattgtgcaggggtttgaacgcttg
aagcaattgtttaacatgattgcgcctaaagaatgagaaactgcagtaatttcgcaatta
aacggggtagttgaatcaatcgaaaacaaaacttgagaaggttcaaaaatttcacaagtt
tatattacaatccgtaacaaaattgattaccgggtgtatattgtcaatattaacgcgtca
ttacgggtaaaagtcggccaagaaattaaggtcggtgacaaaatcactgaaggttcaatc
gatgtaaaagaactactgaaaattgcgggaattgatgcggtgcggaattacatgattaaa
gaagtacaaaaagtttaccggttgcaagggattgaaattgctgacaaatatgtcgaagtg
attatccgccagttaacttctaaagttcaaattcaatcaccaaatgattcttcatgattc
attcatgaaattgttgatgttaacttattccgtgaagaatgtacccgtttactcttaaat
gggaaaaatcccccaaccgcgattaacatcgtgtttggcctagaacaagccccagccaat
accaattcctttttatcagcggcatcattccaagataccaaaaaaattctgaccgatgct
gcagttaaggggcaaattgattacttacattcgctaaaagaaaatgtgatcatggggaat
ttaattcccgctggaactgggttaaaaacgcctcaagaagtgatcaaacgcgccaaagaa
ttgggcaaatttgattattaa
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