Methanocaldococcus fervens: Mefer_0728
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Entry
Mefer_0728 CDS
T00976
Name
(GenBank) DNA topoisomerase I
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
mfe
Methanocaldococcus fervens
Brite
KEGG Orthology (KO) [BR:
mfe00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
mfe03032
]
Mefer_0728
03400 DNA repair and recombination proteins [BR:
mfe03400
]
Mefer_0728
Enzymes [BR:
mfe01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
Mefer_0728
DNA replication proteins [BR:
mfe03032
]
Prokaryotic type
DNA Topoisomerases
Mefer_0728
DNA repair and recombination proteins [BR:
mfe03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
Mefer_0728
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Zn_ribbon_Top1
Toprim
DUF1272
ADK_lid
Lar_restr_allev
HTH_TIMELESS
HMBD
LMBR1
CoiA_N
Motif
Other DBs
NCBI-ProteinID:
ACV24546
UniProt:
C7P7L4
LinkDB
All DBs
Position
677356..679635
Genome browser
AA seq
759 aa
AA seq
DB search
MTALIICEKPSVAKKIANALGKAKKKSIDGVPYYELERDGKKIIVASAVGHLFTLVEKEN
KEFGTYPVFDVKWVPASVDKGKEYVNKYIKALKKLSKEANEFYVATDWDIEGELIGYHAL
KYCCGREKAKRMRFSSLTKKEIVKAFENPDEIDYGLVDAGESRHIVDWYFGINLSRALMN
AIRAVNRWKTMSIGRVQGPALAFLTERELEIKKFVPKPYWVIEALLKDNLKAIHEKEKFW
DEKEAKNIYEKIKDEKTAKVLEVKKTKRKIKPLPPFDLGTLQREAYSYFKISPKETQEIA
QNLYEKALISYPRTSSQKLPKDRKYLEDILKIIKEHPIYGKWVGRILKDNLKPVGGKKED
PAHPAIHIVDVPKEELSEKEKKIYDLIARRTLAAFWDNAEREYLNIKIDIKGEIFKLSGS
RTVKEGWHEIYYFPKFDEVELPPLKKNDIINIEKITITRKETQPPKRYTVASIIKELEKK
GLGTKATRAEIVDKLIKRGYVVDEGSLKVTDLGISVIETLKRFCPEIIDEKMTRDLEEKL
EKIQFRKIKKDDVLEEAEKKLRKILEEFKKKEKDIGTYLIKNLDSTNKKAKIVGKCPKCG
GDLILIRYNKSRFVGCSNYPECDVKYSLPDKGRIKIPNKSCEACKSPILKIGDKEVCINP
ECPLKYVEVKEENKKCPKCGGDLILKKGIYGAFYGCSNYPKCKYTEPVNKKEKEVVGKCP
KCGGDLVIREGKFGKFAGCSNYPKCKYTEKLKIVEKEEK
NT seq
2280 nt
NT seq
+upstream
nt +downstream
nt
atgactgcattaataatatgtgaaaagcccagtgttgctaaaaaaatagcaaacgcttta
ggaaaagctaagaaaaaaagcattgatggagttccatactacgaattagaaagagatggg
aaaaaaatcattgttgcgagtgctgttggacatttatttactttagttgagaaggaaaat
aaagaatttggaacctatccagtttttgatgtaaaatgggtgcccgcaagcgttgataaa
ggaaaagagtatgtaaataaatacataaaagcattaaaaaaactgtcaaaagaggcaaat
gagttctatgtagcaacagattgggatattgaaggggagttaataggttatcatgcatta
aaatattgctgtggaagagaaaaagcaaaaaggatgagattttcatcattaacaaaaaaa
gagatcgttaaagcttttgaaaatcctgatgaaattgattatgggttagttgatgctggg
gagagcaggcatattgtagattggtattttggtataaatttgtcaagggctttaatgaat
gccataagggcagtgaatagatggaaaacaatgagtattggtagagtccaaggtcctgca
ttagcttttttaaccgaaagagagttagaaattaaaaaatttgtcccaaaaccatattgg
gttattgaagctctattaaaggataatttaaaagctatacatgaaaaggaaaaattttgg
gatgaaaaggaagcaaaaaatatttatgaaaaaataaaagatgaaaaaactgccaaagtt
ttagaagtaaagaaaacaaaaagaaagataaagccccttccaccatttgatttggggact
ttacagagagaggcttacagctattttaaaatatctccaaaagaaacgcaagaaattgcc
caaaatttatatgaaaaagctcttattagttatccaaggacaagctctcaaaaacttcca
aaagataggaaatatttagaagatattttaaaaataataaaagagcatccaatttatgga
aaatgggtaggcagaattttaaaagataatttaaaaccagttgggggaaagaaagaagat
cctgcacatcctgccatacatattgtagatgtcccaaaggaagaactttctgagaaggag
aaaaagatttatgatttaattgcaagaagaactttagctgcattttgggataacgcagag
agagaatatttaaacataaaaattgacattaaaggggagatatttaagctatctggctca
aggactgtaaaagaaggttggcatgaaatttactacttcccaaaatttgatgaagttgag
ctacctccattaaagaaaaacgatataataaatattgaaaaaataacgataacgagaaaa
gaaacccagccaccaaaaagatacactgtcgcaagcataattaaagaattagagaaaaaa
ggattaggaacaaaggctacaagggcagagattgtagataaattaataaaaagaggttac
gttgtagatgaaggttctttaaaagtaactgacttgggaatttcagtaattgaaacgtta
aaaagattctgtccagaaattattgatgaaaagatgacaagagatttagaggagaagtta
gaaaaaatacagtttaggaaaattaagaaagatgatgttttagaagaagcagaaaagaaa
ttgaggaagatattggaagaatttaaaaagaaagagaaagatattggaacttatcttata
aaaaacttagattccacaaataaaaaagcaaaaattgtaggaaaatgtccaaaatgtggg
ggagatttaattttaattagatacaataaaagcaggtttgttggttgctctaactatcct
gaatgtgatgtaaaatactctctaccagataagggaagaataaaaattccaaataaatct
tgtgaagcttgtaaatcacctatcttaaaaatcggagacaaggaggtttgtattaatcca
gaatgtcctttaaaatatgttgaagttaaagaagaaaataaaaaatgccctaagtgcgga
ggggatttaattttaaagaaagggatttacggagctttttatggctgttccaattatcca
aagtgtaaatatactgagccggtaaataaaaaagagaaagaagttgttggcaagtgtcca
aaatgcgggggagatttagtaattagagaagggaaatttgggaaatttgctggctgttca
aactatccaaaatgtaaatacacagaaaaactaaaaatagtcgaaaaagaagaaaaataa
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