Methanocaldococcus fervens: Mefer_0851
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Entry
Mefer_0851 CDS
T00976
Name
(GenBank) phosphoesterase RecJ domain protein
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
mfe
Methanocaldococcus fervens
Pathway
mfe03410
Base excision repair
mfe03430
Mismatch repair
mfe03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
mfe00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
Mefer_0851
03430 Mismatch repair
Mefer_0851
03440 Homologous recombination
Mefer_0851
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mfe03400
]
Mefer_0851
DNA repair and recombination proteins [BR:
mfe03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
Mefer_0851
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
Mefer_0851
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
Mefer_0851
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DHHA1
DHH
DHH_CID
CASP_C
Rubrerythrin
Motif
Other DBs
NCBI-ProteinID:
ACV24669
UniProt:
C7P7Y7
LinkDB
All DBs
Position
complement(802102..803511)
Genome browser
AA seq
469 aa
AA seq
DB search
MESWAELKKGAKVLEKNKDNKILIATHIDTDGLTSRAILQKLTERLNLDADFMFLKQITI
ETINDIPFKDYDLVIFADLGSGQLKMIKEKLDELNLSDKKDKIIILDHHQPEEIKVPEAV
IHINPLTIGKSGAEICGAGVSYLFAKAINNEWVDLAKYAVLGAIGDIQNIEGKLTGLNRE
ILNDAIMNGNIKIKSDLQMYGRQTRPLFVSMRYWVDVRTDLLNNDSRIIKYIQYINKKYG
IDVNPTMRLAEIPFEYKKIIGNELLIKCLNYVPNHWAPYIPKVIFGEVYEFRGEEFGSPL
RDLEEFSTCINACSRYGDYETALNVLMGDRDKYYKKMLSNLRKHRNNLREALEHVKNDVE
IVKKDNFQYFETDKIMPNIIGIVAGMSYSIEETDWMKPIFAITEDENGYKVSARCPKLLC
FADNVNLAKAIKYASEKVNGSGGGHKFASGAYIPDNKRDFIKYLEIALK
NT seq
1410 nt
NT seq
+upstream
nt +downstream
nt
atggaaagttgggcagagttaaaaaaaggagctaaggttttagaaaaaaataaggataat
aaaattttgatagccacgcatatagatactgatgggttaacatcgagagctattttgcaa
aagttgactgagagactaaatttggatgctgattttatgtttttaaagcaaattactata
gaaacaataaatgacattccatttaaagattatgacttagtgatttttgctgacttaggt
agtgggcaattgaagatgatcaaagagaagttggatgagctcaatttatcagataaaaaa
gataaaattattattttagaccaccatcagccagaggaaataaaagttcctgaagctgtg
atacatataaacccattaacaataggaaaaagtggagctgaaatttgtggagctggtgtt
tcttatctatttgcaaaagccataaataatgaatgggttgatttggctaaatatgcagtt
ttgggagctattggtgacatccaaaatatagaaggaaaacttactggcttaaatagagag
atattaaatgatgccattatgaatggaaatattaaaataaaaagtgatttacagatgtat
ggaaggcagacgagacctttatttgtgtctatgagatattgggtggatgttagaactgat
ttattaaacaacgattcgagaataataaaatacatccagtatataaataaaaagtatggc
attgatgtaaatccaacgatgagattggctgagattccttttgaatataagaagattatc
ggaaatgaacttttaataaaatgcttaaattatgttccgaatcattgggctccttatatt
ccaaaagtcatatttggagaagtttatgaatttagaggggaagagttcggctctcctttg
agagatttggaggagttttctacctgcataaatgcatgttcgagatatggagactatgag
acagctttaaatgtgttgatgggagatagggataaatattataaaaaaatgctttcaaat
ttgagaaagcataggaataatttgagagaagctttagagcatgtgaaaaacgatgtagag
atagttaagaaagataatttccaatattttgaaactgataaaattatgccaaatattatt
ggaattgttgctggaatgagctattctatagaggaaactgattggatgaaaccaatattt
gcaataacagaggatgagaatggttataaagtttctgcacgatgtcctaagcttttatgc
tttgccgataatgtaaatttagctaaggcaataaaatatgcttcagaaaaggttaatgga
agtggtgggggtcataaatttgcttctggagcttacatcccagacaataaaagagatttt
ataaaataccttgagattgcccttaaataa
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