Methanocaldococcus fervens: Mefer_1397
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Entry
Mefer_1397 CDS
T00976
Name
(GenBank) tRNA intron endonuclease
KO
K01170
tRNA-intron endonuclease, archaea type [EC:
4.6.1.16
]
Organism
mfe
Methanocaldococcus fervens
Brite
KEGG Orthology (KO) [BR:
mfe00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
mfe03016
]
Mefer_1397
Enzymes [BR:
mfe01000
]
4. Lyases
4.6 Phosphorus-oxygen lyases
4.6.1 Phosphorus-oxygen lyases (only sub-subclass identified to date)
4.6.1.16 tRNA-intron lyase
Mefer_1397
Transfer RNA biogenesis [BR:
mfe03016
]
Prokaryotic type
tRNA spricing factors
tRNA splicing endonucleases
Mefer_1397
BRITE hierarchy
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Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_int_endo
tRNA_int_endo_N
Sen15
WHD_MCM8
Motif
Other DBs
NCBI-ProteinID:
ACV25204
UniProt:
C7P9H2
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All DBs
Position
complement(1312826..1313347)
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AA seq
173 aa
AA seq
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MGKKIIGSLDGDRVIVFDKNGISKLSSKHYGNVEGNFLSLSLVEALYLTNLGWLAVKDNN
KILSFEELYEYAKNIEERLCLKYLVYKDLRSRGYIVKTGLKYGADFRLYERGANIDKEHS
VYLVKVFTEDSSFLLNELTGFVRVAHSVRKKLLIAIVDADGDIVYYNMTYVKP
NT seq
522 nt
NT seq
+upstream
nt +downstream
nt
atgggcaaaaaaataattggatcgttggatggagatagggttatagtatttgacaagaat
ggaatatctaagctatcatcaaagcattatggaaacgttgaagggaattttttatcgtta
tctttagttgaagctctatatttaacaaatttaggatggttggcagttaaagacaacaac
aaaattttaagttttgaggagttgtatgaatacgcaaaaaatattgaagagcggctatgt
ctaaaatatttagtttataaagatttaagaagtagaggctatatagtaaaaacaggttta
aagtatggagctgattttaggctttatgagagaggagcaaacattgataaagaacactcc
gtttatttggttaaggtatttaccgaagatagctctttcttattaaatgagctaactggc
tttgttagagttgcccattctgttaggaaaaagttgttaatagctatagttgatgcagat
ggagatatcgtttattacaacatgacttatgtaaaaccatag
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