KEGG   Methanobacterium ferruginis: GCM10025860_09740
Entry
GCM10025860_09740 CDS       T09214                                 
Name
(GenBank) DNA ligase
  KO
K10747  DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
Organism
mfeg  Methanobacterium ferruginis
Pathway
mfeg03030  DNA replication
mfeg03410  Base excision repair
mfeg03420  Nucleotide excision repair
mfeg03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:mfeg00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    GCM10025860_09740
   03410 Base excision repair
    GCM10025860_09740
   03420 Nucleotide excision repair
    GCM10025860_09740
   03430 Mismatch repair
    GCM10025860_09740
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:mfeg03032]
    GCM10025860_09740
   03400 DNA repair and recombination proteins [BR:mfeg03400]
    GCM10025860_09740
Enzymes [BR:mfeg01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     GCM10025860_09740
    6.5.1.6  DNA ligase (ATP or NAD+)
     GCM10025860_09740
    6.5.1.7  DNA ligase (ATP, ADP or GTP)
     GCM10025860_09740
DNA replication proteins [BR:mfeg03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   Other elongation factors
    GCM10025860_09740
 Prokaryotic type
   Elongation factors (archaeal)
    Other elongation factors
     GCM10025860_09740
DNA repair and recombination proteins [BR:mfeg03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     GCM10025860_09740
   NER (nucleotide excision repair)
    Other NER factors
     GCM10025860_09740
   MMR (mismatch excision repair)
    Other MMR factors
     GCM10025860_09740
SSDB
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_A_C RNA_ligase Vts1
Other DBs
NCBI-ProteinID: BDZ67526
LinkDB
Position
923079..924377
AA seq 432 aa
MAEISGNRAQFKKIDYLMELLSSASPLEAKYLTRTVLEELRVGVGEGTIRDAISQAFNIP
PEVVERALMLTNDIGLVAEVARMEGETGLRQLTLKPGKPVKPMLAQLSPGIKISVEEMGW
AMCETKYDGIRVQIHSHDDEIDIFTRRLENISHALPEIGDYIKKSLPQEDFIVEGEIIAS
RDGKPVSFQYMLQRVRRKYEVDKMISKVPLTLYLFDVLYYQGPVLDEPLQKRRRILESIV
KPVQGKLELSMQVNVTPEEIQKAHDLFDASINAGHEGIMIKDPHAPYTPGIRGKKMLKLK
AEPETLDLVVVGGTYGKGKRAHLIGSYLMALQDENGQLLTLAYAATGLDDQTLLELSEMV
EPLIISKEGRQVKIEPSIILEIAFSEIVKSPEYESGYSLRFPVVKQIRNDRSLDDIDTLE
RIESMFRNSQKS
NT seq 1299 nt   +upstreamnt  +downstreamnt
atggcagagatatcaggtaacagggctcagtttaaaaaaatcgattacttgatggaatta
ctgtcatctgcttctcctctggaagcaaaatacctcactagaacggttttagaagaactt
cgcgtgggggtaggagagggaaccataagggatgccatttcacaggcctttaacatacct
ccagaagttgttgaaagggccctcatgctcaccaatgatataggtctggtagcagaggtt
gccaggatggaaggagaaacaggattacgccaactaacccttaaaccaggtaaacccgtc
aaacccatgttagctcagctttctccaggaataaagatcagtgtggaggagatgggctgg
gcaatgtgtgaaaccaaatatgatgggataagagtccagatccacagtcatgatgatgaa
attgatattttcacccgtaggctggagaatatttcccatgctcttccagaaataggtgat
tacataaaaaaatcacttccacaggaagactttattgtagaaggtgaaataattgccagt
cgtgatgggaagccagtatccttccagtacatgttgcagagggtgcggaggaagtatgag
gttgataaaatgatttcaaaagtacctcttactttatacctctttgatgtgctttattat
cagggacccgtactggatgaacctcttcagaaaagacgaaggatcttagaatcaatagtt
aagccggtacagggtaaattggagctttcaatgcaagttaatgtcactccagaagaaatc
cagaaagctcatgatcttttcgatgcatctattaacgcgggtcatgaggggataatgatt
aaagatccgcatgcaccctacacaccgggtatccgaggtaaaaaaatgcttaaattaaag
gcagaaccggaaaccctggatctggtggtggttggtggaacctacggaaagggtaagcga
gctcatctcattggatcctacttaatggctcttcaggatgaaaacggccaactcttaact
ctggcttatgctgccactggacttgatgaccagaccttactggaactttccgagatggtg
gaacctctcatcatcagtaaagaaggtaggcaagtgaaaattgagccttccataatcttg
gagatagccttcagtgagatagtgaagagtcctgaatatgaaagcggatattcactgcgc
ttcccagtggttaaacagattcgtaatgatcggagcctggatgatattgatacccttgag
agaatagaatccatgtttcgaaactcccagaaaagttaa

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