KEGG   Methanobacterium ferruginis: GCM10025860_24820
Entry
GCM10025860_24820 CDS       T09214                                 
Name
(GenBank) ribonuclease J
  KO
K12574  ribonuclease J [EC:3.1.-.-]
Organism
mfeg  Methanobacterium ferruginis
Pathway
mfeg03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:mfeg00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    GCM10025860_24820
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:mfeg03019]
    GCM10025860_24820
Messenger RNA biogenesis [BR:mfeg03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Ribonucreases
     GCM10025860_24820
SSDB
Motif
Pfam: RNase_J_b_CASP RMMBL Lactamase_B Lactamase_B_2
Other DBs
NCBI-ProteinID: BDZ69034
LinkDB
Position
complement(2392593..2393942)
AA seq 449 aa
MSVEVIAIGGYEEVGKNMSAVKIGEDVVIFDMGINLDRVNIHEDTDIARMHSLDLIERGV
IPDDTLMKDVDGKVRAIVFTHGHLDHIGAVAKLAHRYDAPLIGTPYTLALVENSIKQERK
FEVSNPLQVLNAGEKLQLSPDITLEFVHTTHSIPQAVNAVLHTPEGIIVYALDFKFDNHQ
MISPPPDYKRLRELGNQGVLALIVETTRMTEKQQEKTHSEKVARIVLEDIMRDILPAKEG
LLVTTFSSHIERIQAICNIAQESNRKILLLGRSMERFGSIAEKIGILDLPKGTSIFGSPK
SVNRALARAEENRSKYILVTTGHQGEPDALLPRIASGRTQFNVAPGDNVVISAPIIPNPT
NVANRNLMERRLKDSGARIYTNAHVSGHAGPEDHRDFIRMLQPEHIIPAHGDLEMLAAYT
EMAEEEGYRMGNNIHILRNGQAQVFNGGI
NT seq 1350 nt   +upstreamnt  +downstreamnt
atgagtgtggaagtaattgccattggtggttacgaagaagtgggcaaaaacatgtccgca
gttaaaatcggggaagatgtagtgatctttgacatgggaatcaacctggacagggttaac
atccatgaagacaccgacattgcccgtatgcacagtctggatctgattgaaagaggagtt
ataccagacgacaccctgatgaaggatgtggatggtaaagtacgggccatagtattcacc
cacggacacctggaccacataggagccgtggctaaactagcccaccgatacgacgcacca
ctcataggaacaccctacaccctggcactggtggaaaacagtataaaacaggaaagaaaa
ttcgaagtatccaaccccctccaggtgttaaatgctggagaaaaattacaactctccccg
gacataaccctggaattcgtgcacaccactcacagtataccccaggcagtgaacgccgtc
ctgcacacacccgaaggtataatagtctatgcattggacttcaaattcgataaccatcag
atgatcagccccccaccagattataaacgtctcagggagttgggaaaccagggagttctg
gccttgattgtggaaaccaccaggatgaccgaaaaacagcaggagaaaacccactccgag
aaggtggcccgtatagtactggaggatatcatgcgagacatcctaccagccaaggaagga
ttactggtcaccactttttcgagtcatattgaacgtatccaggccatatgtaacatagcc
caggaaagcaaccggaaaatcctactacttggacgttccatggaacgtttcggaagtata
gctgaaaaaataggcatcctggatttacccaaaggaaccagcatattcggaagccccaaa
tcagttaaccgggcactggccagggcagaggaaaaccgttctaaatacatactggtaacc
accggacaccagggagaacccgatgcattactacccagaatagccagtggcagaacccag
ttcaatgtagccccaggagataacgtggtaatcagtgcaccgatcatacccaaccccacc
aacgtggccaatcgtaatttaatggaacgacgtttaaaagatagtggggcacgaatatat
accaacgcccacgtatccggacatgcaggtcctgaagaccaccgtgacttcatacgcatg
ctccaacctgaacacatcataccagcacatggtgacctggaaatgctggcagcctacaca
gaaatggcagaggaagaaggatacaggatgggtaataatattcatatacttagaaatgga
caggcacaggttttcaacggaggaatttaa

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