Methanobacterium ferruginis: GCM10025860_24820
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Entry
GCM10025860_24820 CDS
T09214
Name
(GenBank) ribonuclease J
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
mfeg
Methanobacterium ferruginis
Pathway
mfeg03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mfeg00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
GCM10025860_24820
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mfeg03019
]
GCM10025860_24820
Messenger RNA biogenesis [BR:
mfeg03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
GCM10025860_24820
BRITE hierarchy
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Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RMMBL
Lactamase_B
Lactamase_B_2
Motif
Other DBs
NCBI-ProteinID:
BDZ69034
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All DBs
Position
complement(2392593..2393942)
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AA seq
449 aa
AA seq
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MSVEVIAIGGYEEVGKNMSAVKIGEDVVIFDMGINLDRVNIHEDTDIARMHSLDLIERGV
IPDDTLMKDVDGKVRAIVFTHGHLDHIGAVAKLAHRYDAPLIGTPYTLALVENSIKQERK
FEVSNPLQVLNAGEKLQLSPDITLEFVHTTHSIPQAVNAVLHTPEGIIVYALDFKFDNHQ
MISPPPDYKRLRELGNQGVLALIVETTRMTEKQQEKTHSEKVARIVLEDIMRDILPAKEG
LLVTTFSSHIERIQAICNIAQESNRKILLLGRSMERFGSIAEKIGILDLPKGTSIFGSPK
SVNRALARAEENRSKYILVTTGHQGEPDALLPRIASGRTQFNVAPGDNVVISAPIIPNPT
NVANRNLMERRLKDSGARIYTNAHVSGHAGPEDHRDFIRMLQPEHIIPAHGDLEMLAAYT
EMAEEEGYRMGNNIHILRNGQAQVFNGGI
NT seq
1350 nt
NT seq
+upstream
nt +downstream
nt
atgagtgtggaagtaattgccattggtggttacgaagaagtgggcaaaaacatgtccgca
gttaaaatcggggaagatgtagtgatctttgacatgggaatcaacctggacagggttaac
atccatgaagacaccgacattgcccgtatgcacagtctggatctgattgaaagaggagtt
ataccagacgacaccctgatgaaggatgtggatggtaaagtacgggccatagtattcacc
cacggacacctggaccacataggagccgtggctaaactagcccaccgatacgacgcacca
ctcataggaacaccctacaccctggcactggtggaaaacagtataaaacaggaaagaaaa
ttcgaagtatccaaccccctccaggtgttaaatgctggagaaaaattacaactctccccg
gacataaccctggaattcgtgcacaccactcacagtataccccaggcagtgaacgccgtc
ctgcacacacccgaaggtataatagtctatgcattggacttcaaattcgataaccatcag
atgatcagccccccaccagattataaacgtctcagggagttgggaaaccagggagttctg
gccttgattgtggaaaccaccaggatgaccgaaaaacagcaggagaaaacccactccgag
aaggtggcccgtatagtactggaggatatcatgcgagacatcctaccagccaaggaagga
ttactggtcaccactttttcgagtcatattgaacgtatccaggccatatgtaacatagcc
caggaaagcaaccggaaaatcctactacttggacgttccatggaacgtttcggaagtata
gctgaaaaaataggcatcctggatttacccaaaggaaccagcatattcggaagccccaaa
tcagttaaccgggcactggccagggcagaggaaaaccgttctaaatacatactggtaacc
accggacaccagggagaacccgatgcattactacccagaatagccagtggcagaacccag
ttcaatgtagccccaggagataacgtggtaatcagtgcaccgatcatacccaaccccacc
aacgtggccaatcgtaatttaatggaacgacgtttaaaagatagtggggcacgaatatat
accaacgcccacgtatccggacatgcaggtcctgaagaccaccgtgacttcatacgcatg
ctccaacctgaacacatcataccagcacatggtgacctggaaatgctggcagcctacaca
gaaatggcagaggaagaaggatacaggatgggtaataatattcatatacttagaaatgga
caggcacaggttttcaacggaggaatttaa
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