Mycoplasma feriruminatoris: D500_00755
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Entry
D500_00755 CDS
T07962
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
mfer
Mycoplasma feriruminatoris
Pathway
mfer03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mfer00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
D500_00755 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mfer03019
]
D500_00755 (rnr)
03016 Transfer RNA biogenesis [BR:
mfer03016
]
D500_00755 (rnr)
Enzymes [BR:
mfer01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
D500_00755 (rnr)
Messenger RNA biogenesis [BR:
mfer03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
D500_00755 (rnr)
Transfer RNA biogenesis [BR:
mfer03016
]
Prokaryotic type
tRNA degradation factors
D500_00755 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
S1
OB_RNB
CSD2
OB_RNR_1st
RNase_II_C_S1
CEP44
HTH_45
S1_RRP5
Spt6_S1
Motif
Other DBs
NCBI-ProteinID:
UKS54398
LinkDB
All DBs
Position
876230..878344
Genome browser
AA seq
704 aa
AA seq
DB search
MESKIIEILKKNHHKISLNKLLTYFKALDYALVKNYLDQLESNNKIAISLDNNIYLLDEI
YKRGTIKLNPKGFGFINDINSVDNEDYFIAGVDLNNCISQDEVVYILKQEEDNRLKAIVI
ELIKRTKVYLIGEINRSFDKRFLDFIPNDKSFDNFRFVIVNKNEFKYEEFQIIKAKIISC
KERRIFIRLIKIIGNSKKASDRILAIAEEFDIKTSFDKSTLDNAKQINLSTDKLEKEFIK
RQNNSLINKTIVTIDGIDSKDLDDAICVEKLDNGHYKLFVAIADVSYFVRYKSSLDKEAL
LRGNSTYLANKVIPMLPNILSDDLCSLNPDTKKLVFVCEMEFDNNANMLNKKVYESVIIS
KARLNYDEVNNYFKTKTWTHCLETKQMLDVAYELYKKIEDLKTKKGTISFDVREPKIILD
KDLNVIDIKAKTADQAEKLIEQFMVSCNEAVAELVFQKDLPFLYRNHNKPDENELINWYK
SLKTFGINPKLTNKQILNPVFINHTLTQIKEQIKDEIEVELLNISLLRYMEKAKYGLENI
GHFGLASECYTHFTSPIRRYSDLLVHRFLKQYLITKDLKPTSLEQNTVYVNKVSNIINDT
ETKSVDCEREVIKACMCEYMLNKVNTTYQATISSVLKFGIFIQLDNLVEGLVHISNMNND
LVYDEANRILIKPDNTYYRMGQKVKVKLINVDIKKRTIDFVLIE
NT seq
2115 nt
NT seq
+upstream
nt +downstream
nt
atggaatctaagattattgaaattttaaaaaagaaccatcataaaattagtttaaataaa
cttctgacttattttaaagctctagattatgcactagttaaaaactacttagaccaatta
gaatcaaataataaaattgctatttcactagataataatatttatttattagatgaaatc
tataaaagaggaactattaaattaaatccaaaaggttttggttttataaacgatattaat
agtgttgataatgaagattattttatagctggagttgatttaaataattgtattagtcaa
gatgaagtagtttatattttaaaacaagaagaagataatagattaaaagctatagttatt
gaattaattaaaaggacaaaagtttatttaattggtgagataaatagaagttttgataaa
aggtttttagatttcataccaaacgataaatcatttgataattttagatttgtaatagtt
aataaaaatgaatttaaatacgaagaatttcaaattattaaagcaaaaatcattagttgt
aaagaacgtagaatttttataagacttataaaaattattggaaatagtaaaaaagcaagt
gaccgtattttagcaatagctgaagaatttgacattaaaactagttttgacaaatcaaca
ctagataatgctaaacaaattaatttatcaactgataaactagaaaaagaatttataaaa
agacaaaataattctttaattaataaaacaatagtaacaattgatggaattgattcaaaa
gatctagatgatgcaatttgtgttgaaaaactagataatggtcattataagttatttgtt
gctattgctgatgtttcttattttgtaagatataaatctagtttagataaagaagcttta
ttaagaggtaattctacttatttagcaaataaagtaattccaatgctaccaaacatttta
tctgatgatttatgttcattaaatcctgatactaaaaagctagtttttgtatgtgaaatg
gaatttgataataatgcaaatatgttaaataaaaaagtttatgaatcagtaattatttct
aaagctagactaaactatgatgaagtaaacaactattttaaaacaaaaacttgaactcac
tgcttagaaacaaaacaaatgttagatgttgcttatgagttgtataaaaaaatagaagat
ttaaaaactaaaaaaggaactattagttttgatgttagagaaccaaaaattattttagat
aaagatctaaacgtaattgatattaaagctaaaactgctgatcaagctgaaaagttaatt
gaacaatttatggtaagttgtaatgaagcagtagctgaattagtttttcaaaaagatcta
ccttttttatatagaaaccataacaaaccagatgaaaatgaattaattaattgatataaa
tcattaaaaacatttggaataaatccaaaattaactaacaaacaaattctaaatccagta
tttattaatcacactttaactcaaatcaaagaacaaattaaagatgagattgaagttgag
ctattaaatatttctttattaagatatatggaaaaagctaagtatgggttagaaaacatt
ggtcattttggattagctagtgaatgctatactcattttacttcaccaattagaagatat
tcagatcttttagtgcatcgttttttaaaacaatatttaattacaaaagatctaaaacct
actagtttagaacaaaacacagtttatgtaaataaagtaagtaatattattaatgatact
gaaactaaaagtgttgattgtgaaagagaagtaattaaagcatgtatgtgtgaatatatg
ctaaataaagttaatacaacttatcaagcaaccatttcatcagttttaaaatttggaata
tttattcaattagataatctagttgaaggattagtacatatttcaaatatgaataatgat
ttagtttatgatgaagctaatagaattttaattaaaccagataatacttattatagaatg
ggacaaaaagttaaagtaaaactaattaatgttgatattaaaaaaagaacaattgatttt
gttttaatagaatag
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