Micromonospora robiginosa: H1D33_00125
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Entry
H1D33_00125 CDS
T09299
Name
(GenBank) Rne/Rng family ribonuclease
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
mfeu
Micromonospora robiginosa
Pathway
mfeu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mfeu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
H1D33_00125
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mfeu03019
]
H1D33_00125
03009 Ribosome biogenesis [BR:
mfeu03009
]
H1D33_00125
Enzymes [BR:
mfeu01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
H1D33_00125
Messenger RNA biogenesis [BR:
mfeu03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
H1D33_00125
Ribosome biogenesis [BR:
mfeu03009
]
Prokaryotic type
rRNA processing factors
H1D33_00125
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
S1
Motif
Other DBs
NCBI-ProteinID:
QLQ37374
UniProt:
A0A7L6B632
LinkDB
All DBs
Position
143965..147135
Genome browser
AA seq
1056 aa
AA seq
DB search
MLENEPEGGERTGAEPADTTAADSTTGAAEVKPPARKRATRRKAAPLNQPEQTDAPVEAS
AAATGSGESPQAEVFAPVAGELEAAPKTTRRRRKATPAKAVEEPVAVAGVEATSDEVVPP
VKVTRTRRRKATPAAAEPAPVAESPTEAPAEAAGPAVEPPAEALSAGPVVAPPAAPRADA
VVDGPVSVPGGAGGIAEGRAPLDAGEDEDADAVGEDAVDEPTPAEAPARRTRRRTAATGE
AASRRTDDVDLARAGGLADASGAVSTGAAVPGPADEPDAAAAAEERPTTGRRRRAALSAP
TVLFMPPQPDEAPDVQVTYPVAEETAEEPAETGRRRRRGRREAEPIEAEVEAEEEPTAEA
DETAEAEEDDETAEGRRRRRRGRRGRGRGKGGADDVEDEESGTAETADAEAEETAEDEDT
EGEGMTRRRRRRRRRGAGEAETTAEDGVPTVVKIREPRKAVDEVQGVSGSTRLEAKRQRR
RDGREQRRTRPPILSESEFLARREAVDRTMVVRQRGDRTQIAVLEDGVLVEHYVTRNSSA
TMAGNVYLGKVQNVLPSMEAAFVDIGRGRNAVLYAGEVNWDTTGLEGRARSIEQALRSGD
PVLVQVTKDPIGHKGARLTSHVALSGRHLVYVPNGNASGISRKLPDTERKRLRDILKKLV
PDGAGVIVRTAAEGASEDELARDVKRLQAQWEDIQAKAAGGGAPVLLYEEPDLVIRVVRD
LFNEDFRELVIEGESAYDVVESYLSHVSPDLVARLRRHAGVTDVFAEHRIDEQILKGLDR
KVFLPSGGSLVIDRTEAMTVVDVNTGKYTGSGGNLEETVTRNNLEAAEEIVRQLRLRDLG
GIVVIDFIDMVLESNRELVLRRLTECLGRDRTKHQVTEITSLGLVQMTRKRIGAGLLEAF
SETCECCKGRGVVVHTEPVPEKPRGGGAGEKVKAVASAVAPAEEKGRRRGRKAAEKPAPE
AAPEPAAAAEPARTVAEVVEAPDDDYYDTQGYDLSRFADTSATPAVADSQEGDSARLAAA
DDPDALGDGEADDEGADGGTPRRRSRRGGARRRTRP
NT seq
3171 nt
NT seq
+upstream
nt +downstream
nt
atgctcgagaacgagcccgagggcggcgaacggaccggcgcggagccggccgacacgacc
gccgccgacagcaccaccggcgccgccgaggtgaagccgcccgcccgtaagcgggccacc
cgccgcaaggccgccccgctcaaccaaccggagcagaccgacgcgccggtcgaggcgtcc
gccgcggccaccggcagcggcgagtcgccgcaggccgaggtgttcgcgccggtcgccggt
gagctggaggccgcgccgaagaccacccgccggcgccgcaaggcgaccccggcgaaggcg
gtcgaggagccggtggccgtcgccggggtggaagccacctcggacgaggtggtgccgccg
gtcaaggtcacccggacccgccgtcgcaaggccacgccggccgccgccgagccggccccg
gttgccgagtcgccgaccgaggcgcccgccgaggccgccgggccggccgtggagccgccc
gccgaagccctgagcgccgggccggtcgtggcgccgcccgccgcgccgcgtgccgatgcc
gtggtcgacgggccggtctcggtgcccggaggcgcgggcgggatcgccgagggccgcgcg
ccgctcgacgcgggcgaggacgaggacgccgacgcggtgggcgaggacgccgtggacgaa
cccaccccggccgaggcgcccgcgcggcgcacccgtcgccgtaccgccgcgaccggggag
gccgcgtcgcgtcgtaccgacgatgtcgacctggcccgggccggtgggctcgccgacgcc
tccggcgcggtgtccacgggcgccgcggtgccgggtccggcggacgagccggacgccgcc
gcggcggccgaggaacggccgaccactggccggcggcgccgggccgcgctctccgcgccg
accgtcctgttcatgcccccgcagccggatgaggccccggacgtccaggtcacctacccg
gtggccgaggagaccgcggaggagccggccgagaccggccgtcgccgtcgccggggccgt
cgcgaggccgagccgatcgaggccgaggtcgaggccgaggaggagccgaccgccgaggcc
gacgagaccgccgaggccgaggaggacgacgagacggccgagggccggcggcggcgtcgt
cgcggtcgccggggccggggccggggcaagggtggcgccgacgacgtcgaggacgaggag
tccggtacggcggagacggccgacgccgaggccgaggagaccgccgaggacgaggacacc
gagggcgaggggatgacccgtcgccgccgtcgtcgccgtcgccggggcgccggggaggcg
gagaccaccgccgaggacggcgtgcccaccgtcgtcaagatccgtgagccgcgcaaggcc
gtcgacgaggtgcagggcgtctccgggtcgacccggctggaggccaagcggcagcgccgc
cgggacggccgggagcagcggcgtacccggccgccgatcctgagcgagtcggagttcctg
gcccgccgcgaggcggtcgaccggaccatggtcgtgcgccagcgcggcgaccgcacccag
atcgcggtgctcgaggacggcgtgctggtcgagcactacgtgacccgcaactcgtccgcc
accatggccggcaacgtctacctgggcaaggtgcagaacgtcctgcccagcatggaggcg
gcgttcgtcgacatcgggcgcgggcgcaacgccgtgctgtacgccggcgaggtcaactgg
gacaccaccggcctggaggggcgggcccgctcgatcgagcaggcgctgcgctccggcgac
ccggtgctggtgcaggtcaccaaggacccgatcggccacaagggcgcgcggctgaccagc
cacgtcgcgctctccggccggcacctggtctacgtgcccaacggcaacgcctccgggatc
agccgcaagctgccggacaccgagcgcaagcggctgcgcgacatcctcaagaagctggtg
ccggacggcgccggcgtgatcgtccggaccgcggccgagggcgccagcgaggacgagctg
gcccgggacgtcaagcggctccaggcgcagtgggaggacatccaggccaaggcggccggc
ggcggcgccccggtgctgctctacgaggagccggacctggtcatccgggtggtccgggac
ctcttcaacgaggacttccgcgagctggttatcgagggcgagtcggcgtacgacgtggtc
gagtcgtacctgtcgcacgtgtcgccggacctggtcgcgcggctgcgccggcacgccggg
gtgaccgacgtgttcgccgagcaccggatcgacgagcagatcctcaaggggctggaccgg
aaggtcttcctgccctccggcggctcgctggtgatcgaccgcaccgaggcgatgaccgtc
gtcgacgtcaacaccggcaagtacaccggctccggcggcaacctggaggagacggtcacc
cgcaacaacctggaggcggccgaggagatcgtgcgccagctccggctgcgtgacctcggt
ggcatcgtggtgatcgacttcatcgacatggtgctcgagtcgaaccgggagctggtgctg
cgccggctcaccgagtgcctgggccgggaccgcaccaagcaccaggtcaccgagatcacc
tcgctgggcctggtgcagatgacccgcaagcggatcggcgcgggcctgctggaggcgttc
agcgagacctgcgagtgctgcaagggccggggtgtggtcgtccacaccgagccggtgccg
gagaagccgcgtggcggcggcgccggggagaaggtcaaggcggtcgcctcggcggtcgcg
ccggccgaggagaagggccgccgccggggtcgcaaggccgcggagaagcccgccccggag
gccgcgccggagccggcggccgccgccgagccggcccggaccgtcgccgaggtggtcgag
gcccccgacgacgactactacgacacccagggttacgacctgtcccggttcgccgacacg
tcggccaccccggcggtcgcggacagccaggagggcgactcggcccggctggccgccgcc
gacgacccggacgcgctcggtgacggcgaggccgacgacgagggcgccgacggtggcacc
ccacggcggcggtcccggcgtggcggcgcccggcggcgtacccggccgtga
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